miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 3' -53.4 NC_005261.1 + 47640 0.66 0.956863
Target:  5'- cGCGCGCaCCGCGuCCUCcUCGaCGg-- -3'
miRNA:   3'- -CGCGUG-GGUGUuGGAGaAGCaGCacu -5'
23577 3' -53.4 NC_005261.1 + 47802 0.67 0.952911
Target:  5'- cGCGCGCCCGCccACgUCgaaCGUCGc-- -3'
miRNA:   3'- -CGCGUGGGUGu-UGgAGaa-GCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 50823 0.66 0.960582
Target:  5'- gGCGCGCCCGuCGACggCgcCGUCGaGAc -3'
miRNA:   3'- -CGCGUGGGU-GUUGgaGaaGCAGCaCU- -5'
23577 3' -53.4 NC_005261.1 + 51109 0.68 0.924134
Target:  5'- cGCGUACCCGCGGCC-CUUCu------ -3'
miRNA:   3'- -CGCGUGGGUGUUGGaGAAGcagcacu -5'
23577 3' -53.4 NC_005261.1 + 51311 0.67 0.939142
Target:  5'- cGCGCACgccggcgCCGCcGCCgcCUUCGUCGg-- -3'
miRNA:   3'- -CGCGUG-------GGUGuUGGa-GAAGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 51415 0.74 0.604008
Target:  5'- cGCGCGCCCACcGCCUgCUgggccccgggcgCGcCGUGAu -3'
miRNA:   3'- -CGCGUGGGUGuUGGA-GAa-----------GCaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 53540 0.7 0.814969
Target:  5'- cGCGUGCCCGCGcGCCggCUUCGU-GUGc -3'
miRNA:   3'- -CGCGUGGGUGU-UGGa-GAAGCAgCACu -5'
23577 3' -53.4 NC_005261.1 + 57977 0.71 0.768862
Target:  5'- aCGUACCUggcgcGCGGCggCUUCGUCGUGGc -3'
miRNA:   3'- cGCGUGGG-----UGUUGgaGAAGCAGCACU- -5'
23577 3' -53.4 NC_005261.1 + 60440 0.66 0.970397
Target:  5'- gGCGCGCCCuCGccgggguaguagGCCUCgUCGUCc--- -3'
miRNA:   3'- -CGCGUGGGuGU------------UGGAGaAGCAGcacu -5'
23577 3' -53.4 NC_005261.1 + 61161 0.73 0.689058
Target:  5'- gGCGcCGCCUcgACGGCCUCUUCGUggcCGUcGAg -3'
miRNA:   3'- -CGC-GUGGG--UGUUGGAGAAGCA---GCA-CU- -5'
23577 3' -53.4 NC_005261.1 + 61202 0.75 0.585376
Target:  5'- cCGCGCgCGCGGCCUCggCGUCGgcgagGAg -3'
miRNA:   3'- cGCGUGgGUGUUGGAGaaGCAGCa----CU- -5'
23577 3' -53.4 NC_005261.1 + 61354 0.66 0.960582
Target:  5'- aGCGUGCCguCGGCCUCcUCGcCGg-- -3'
miRNA:   3'- -CGCGUGGguGUUGGAGaAGCaGCacu -5'
23577 3' -53.4 NC_005261.1 + 61771 0.67 0.948723
Target:  5'- cGCGCGCCgGCGccGCCgUCgcCGUCGg-- -3'
miRNA:   3'- -CGCGUGGgUGU--UGG-AGaaGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 62360 0.7 0.856801
Target:  5'- cGCGCGCCCACGgcGCCgUCggggccgcCGUCGg-- -3'
miRNA:   3'- -CGCGUGGGUGU--UGG-AGaa------GCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 62376 0.72 0.719615
Target:  5'- cGCGCGCCUGCGGCagcggCacCGUCGUGGg -3'
miRNA:   3'- -CGCGUGGGUGUUGga---GaaGCAGCACU- -5'
23577 3' -53.4 NC_005261.1 + 64563 0.74 0.616471
Target:  5'- cCGCGCCCGC--CCUCcgCGUCGUGc -3'
miRNA:   3'- cGCGUGGGUGuuGGAGaaGCAGCACu -5'
23577 3' -53.4 NC_005261.1 + 65034 0.69 0.864566
Target:  5'- -gGCGCCCGgGGCCaaccUCGUCGUGu -3'
miRNA:   3'- cgCGUGGGUgUUGGaga-AGCAGCACu -5'
23577 3' -53.4 NC_005261.1 + 66101 0.69 0.88654
Target:  5'- uCGCACCCGgGG-CUCUUCGggGUGGc -3'
miRNA:   3'- cGCGUGGGUgUUgGAGAAGCagCACU- -5'
23577 3' -53.4 NC_005261.1 + 67254 0.69 0.864566
Target:  5'- cGCGCGCCaCGCGcuCUUCUUCGcCGUc- -3'
miRNA:   3'- -CGCGUGG-GUGUu-GGAGAAGCaGCAcu -5'
23577 3' -53.4 NC_005261.1 + 68306 0.67 0.929544
Target:  5'- cGCGgACCUcuGCGGCCgCUUCGaCGUGc -3'
miRNA:   3'- -CGCgUGGG--UGUUGGaGAAGCaGCACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.