Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23577 | 3' | -53.4 | NC_005261.1 | + | 60440 | 0.66 | 0.970397 |
Target: 5'- gGCGCGCCCuCGccgggguaguagGCCUCgUCGUCc--- -3' miRNA: 3'- -CGCGUGGGuGU------------UGGAGaAGCAGcacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 118993 | 0.66 | 0.970397 |
Target: 5'- aGCGCcCCCGCAGUCUCg-CGggGUGAg -3' miRNA: 3'- -CGCGuGGGUGUUGGAGaaGCagCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 88711 | 0.66 | 0.970397 |
Target: 5'- gGCgGCugGCCCGCGACCUUUUCGg----- -3' miRNA: 3'- -CG-CG--UGGGUGUUGGAGAAGCagcacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 74454 | 0.66 | 0.967344 |
Target: 5'- cGCGCGCgCACGuggACCUCgg---CGUGGg -3' miRNA: 3'- -CGCGUGgGUGU---UGGAGaagcaGCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 105924 | 0.66 | 0.963394 |
Target: 5'- cGCGCGCCCACGccgcgcCCUCcgcgagcgcgcCGUCGaUGGc -3' miRNA: 3'- -CGCGUGGGUGUu-----GGAGaa---------GCAGC-ACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 106288 | 0.66 | 0.96305 |
Target: 5'- cGUGCaaacGCCguCGACCUCggcgagcaggucuucCGUCGUGAg -3' miRNA: 3'- -CGCG----UGGguGUUGGAGaa-------------GCAGCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 115958 | 0.66 | 0.96305 |
Target: 5'- aCGCGCCCAgcACCUCgUccuccgagguguagUCGUCGcUGAc -3' miRNA: 3'- cGCGUGGGUguUGGAG-A--------------AGCAGC-ACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 47377 | 0.66 | 0.960582 |
Target: 5'- aGCGCGCgCACAACCg--UCGgggCGg-- -3' miRNA: 3'- -CGCGUGgGUGUUGGagaAGCa--GCacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 3749 | 0.66 | 0.956863 |
Target: 5'- gGCGCACCgCGCcGCCUCUagCGccUCGcGGc -3' miRNA: 3'- -CGCGUGG-GUGuUGGAGAa-GC--AGCaCU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 69614 | 0.67 | 0.952911 |
Target: 5'- cGCGCGCCCGCcGCC-CggcaCGgCGUGc -3' miRNA: 3'- -CGCGUGGGUGuUGGaGaa--GCaGCACu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 94613 | 0.67 | 0.952911 |
Target: 5'- cGCGCGCCCucGCcGCCgccggCgccgUCGUCGg-- -3' miRNA: 3'- -CGCGUGGG--UGuUGGa----Ga---AGCAGCacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 119515 | 0.67 | 0.952911 |
Target: 5'- cCGCGCCCgACGAUCUCUgcuUCGccgaCGUGc -3' miRNA: 3'- cGCGUGGG-UGUUGGAGA---AGCa---GCACu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 119209 | 0.67 | 0.948723 |
Target: 5'- cGCGCGCCCGCcauGGCC-CUgccggggCGagCGUGGc -3' miRNA: 3'- -CGCGUGGGUG---UUGGaGAa------GCa-GCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 69369 | 0.67 | 0.94338 |
Target: 5'- cGCGCGCgCugGACCUCgagaugaccgcCGUCcUGAg -3' miRNA: 3'- -CGCGUGgGugUUGGAGaa---------GCAGcACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 85034 | 0.67 | 0.939623 |
Target: 5'- cCGCGCCC-CGGCCacgaUCGcCGUGAg -3' miRNA: 3'- cGCGUGGGuGUUGGaga-AGCaGCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 51311 | 0.67 | 0.939142 |
Target: 5'- cGCGCACgccggcgCCGCcGCCgcCUUCGUCGg-- -3' miRNA: 3'- -CGCGUG-------GGUGuUGGa-GAAGCAGCacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 70583 | 0.67 | 0.939623 |
Target: 5'- cGCGCggacgggcgGCCCGCGuUCUCggCGUaCGUGGu -3' miRNA: 3'- -CGCG---------UGGGUGUuGGAGaaGCA-GCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 61771 | 0.67 | 0.948723 |
Target: 5'- cGCGCGCCgGCGccGCCgUCgcCGUCGg-- -3' miRNA: 3'- -CGCGUGGgUGU--UGG-AGaaGCAGCacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 79158 | 0.67 | 0.952911 |
Target: 5'- gGCGCACCCGCGcGCgCUCUcCG-CGg-- -3' miRNA: 3'- -CGCGUGGGUGU-UG-GAGAaGCaGCacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 47802 | 0.67 | 0.952911 |
Target: 5'- cGCGCGCCCGCccACgUCgaaCGUCGc-- -3' miRNA: 3'- -CGCGUGGGUGu-UGgAGaa-GCAGCacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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