Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23577 | 3' | -53.4 | NC_005261.1 | + | 22122 | 0.71 | 0.778373 |
Target: 5'- aGCGCuCCUACuACCcgaUCUUCGUCGcgGAc -3' miRNA: 3'- -CGCGuGGGUGuUGG---AGAAGCAGCa-CU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 119961 | 0.71 | 0.787748 |
Target: 5'- cGCGCACCCGCcgUCUC--CGUCGa-- -3' miRNA: 3'- -CGCGUGGGUGuuGGAGaaGCAGCacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 127585 | 0.71 | 0.796979 |
Target: 5'- aGgGCGCCCugGGCgUCUUCGgggccgCGcUGAa -3' miRNA: 3'- -CgCGUGGGugUUGgAGAAGCa-----GC-ACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 53540 | 0.7 | 0.814969 |
Target: 5'- cGCGUGCCCGCGcGCCggCUUCGU-GUGc -3' miRNA: 3'- -CGCGUGGGUGU-UGGa-GAAGCAgCACu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 36794 | 0.7 | 0.832273 |
Target: 5'- aGCGCuggaCCGCGccGCCUCggcggccgaCGUCGUGAc -3' miRNA: 3'- -CGCGug--GGUGU--UGGAGaa-------GCAGCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 119052 | 0.7 | 0.832273 |
Target: 5'- aCGCGCCCGCGGCCg---CG-CGUGu -3' miRNA: 3'- cGCGUGGGUGUUGGagaaGCaGCACu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 6640 | 0.7 | 0.848826 |
Target: 5'- cGCGCGCgCGCGuagGCCUCggcCGUCGcGGg -3' miRNA: 3'- -CGCGUGgGUGU---UGGAGaa-GCAGCaCU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 62360 | 0.7 | 0.856801 |
Target: 5'- cGCGCGCCCACGgcGCCgUCggggccgcCGUCGg-- -3' miRNA: 3'- -CGCGUGGGUGU--UGG-AGaa------GCAGCacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 125315 | 0.7 | 0.856801 |
Target: 5'- cGgGCGCuCCGCGGCCUCggCGUCc--- -3' miRNA: 3'- -CgCGUG-GGUGUUGGAGaaGCAGcacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 65034 | 0.69 | 0.864566 |
Target: 5'- -gGCGCCCGgGGCCaaccUCGUCGUGu -3' miRNA: 3'- cgCGUGGGUgUUGGaga-AGCAGCACu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 67254 | 0.69 | 0.864566 |
Target: 5'- cGCGCGCCaCGCGcuCUUCUUCGcCGUc- -3' miRNA: 3'- -CGCGUGG-GUGUu-GGAGAAGCaGCAcu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 36667 | 0.69 | 0.864566 |
Target: 5'- cGCGCGCCgagCGCAuCCUCggcgagGUCGUGGc -3' miRNA: 3'- -CGCGUGG---GUGUuGGAGaag---CAGCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 118862 | 0.69 | 0.872115 |
Target: 5'- gGCGCGCCCGCGGCC-CUggCcUCGg-- -3' miRNA: 3'- -CGCGUGGGUGUUGGaGAa-GcAGCacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 103325 | 0.69 | 0.879441 |
Target: 5'- cCGCGCCC-CGACCUCcgCGUCc--- -3' miRNA: 3'- cGCGUGGGuGUUGGAGaaGCAGcacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 86208 | 0.69 | 0.879441 |
Target: 5'- gGCGUugGCCucguaCACGGCCUCcUCGUCGUc- -3' miRNA: 3'- -CGCG--UGG-----GUGUUGGAGaAGCAGCAcu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 68632 | 0.69 | 0.88654 |
Target: 5'- cGCGCccGCCCGCGACCgaggUCaUCGUCa--- -3' miRNA: 3'- -CGCG--UGGGUGUUGG----AGaAGCAGcacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 133150 | 0.69 | 0.88654 |
Target: 5'- uGCGCGCUCGCcGCCgUCggCGUCGc-- -3' miRNA: 3'- -CGCGUGGGUGuUGG-AGaaGCAGCacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 66101 | 0.69 | 0.88654 |
Target: 5'- uCGCACCCGgGG-CUCUUCGggGUGGc -3' miRNA: 3'- cGCGUGGGUgUUgGAGAAGCagCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 37925 | 0.69 | 0.889315 |
Target: 5'- aGCGCGCCCGCGACgCggaCUUUGgggccuucugccgcuUCGUGc -3' miRNA: 3'- -CGCGUGGGUGUUG-Ga--GAAGC---------------AGCACu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 132707 | 0.68 | 0.900037 |
Target: 5'- cGCGCcgaaGCCgGCGGCCUCgcCGcCGUGc -3' miRNA: 3'- -CGCG----UGGgUGUUGGAGaaGCaGCACu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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