miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 3' -53.4 NC_005261.1 + 51415 0.74 0.604008
Target:  5'- cGCGCGCCCACcGCCUgCUgggccccgggcgCGcCGUGAu -3'
miRNA:   3'- -CGCGUGGGUGuUGGA-GAa-----------GCaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 119209 0.67 0.948723
Target:  5'- cGCGCGCCCGCcauGGCC-CUgccggggCGagCGUGGc -3'
miRNA:   3'- -CGCGUGGGUG---UUGGaGAa------GCa-GCACU- -5'
23577 3' -53.4 NC_005261.1 + 92580 0.68 0.924134
Target:  5'- cGCGCGCCCACGcgcgagcgcaGCCgCUcgCGgcgCGUGc -3'
miRNA:   3'- -CGCGUGGGUGU----------UGGaGAa-GCa--GCACu -5'
23577 3' -53.4 NC_005261.1 + 38061 0.68 0.918478
Target:  5'- cGgGCagGCCCACGGCCUggcCUUCaG-CGUGAa -3'
miRNA:   3'- -CgCG--UGGGUGUUGGA---GAAG-CaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 101101 0.68 0.900037
Target:  5'- aGCGCGgCCGCGcgcGCCUUggCGcccUCGUGGu -3'
miRNA:   3'- -CGCGUgGGUGU---UGGAGaaGC---AGCACU- -5'
23577 3' -53.4 NC_005261.1 + 23053 0.81 0.285774
Target:  5'- gGCaGCACCCuCAGCUUCUUCGUCGUc- -3'
miRNA:   3'- -CG-CGUGGGuGUUGGAGAAGCAGCAcu -5'
23577 3' -53.4 NC_005261.1 + 93590 0.73 0.658062
Target:  5'- cGCGCGCUCgGCGACCUCgcCGUCGc-- -3'
miRNA:   3'- -CGCGUGGG-UGUUGGAGaaGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 62376 0.72 0.719615
Target:  5'- cGCGCGCCUGCGGCagcggCacCGUCGUGGg -3'
miRNA:   3'- -CGCGUGGGUGUUGga---GaaGCAGCACU- -5'
23577 3' -53.4 NC_005261.1 + 119961 0.71 0.787748
Target:  5'- cGCGCACCCGCcgUCUC--CGUCGa-- -3'
miRNA:   3'- -CGCGUGGGUGuuGGAGaaGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 125315 0.7 0.856801
Target:  5'- cGgGCGCuCCGCGGCCUCggCGUCc--- -3'
miRNA:   3'- -CgCGUG-GGUGUUGGAGaaGCAGcacu -5'
23577 3' -53.4 NC_005261.1 + 114452 1.11 0.003851
Target:  5'- uGCGCACCCACAACCUCUUCGUCGUGAc -3'
miRNA:   3'- -CGCGUGGGUGUUGGAGAAGCAGCACU- -5'
23577 3' -53.4 NC_005261.1 + 70583 0.67 0.939623
Target:  5'- cGCGCggacgggcgGCCCGCGuUCUCggCGUaCGUGGu -3'
miRNA:   3'- -CGCG---------UGGGUGUuGGAGaaGCA-GCACU- -5'
23577 3' -53.4 NC_005261.1 + 61771 0.67 0.948723
Target:  5'- cGCGCGCCgGCGccGCCgUCgcCGUCGg-- -3'
miRNA:   3'- -CGCGUGGgUGU--UGG-AGaaGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 79158 0.67 0.952911
Target:  5'- gGCGCACCCGCGcGCgCUCUcCG-CGg-- -3'
miRNA:   3'- -CGCGUGGGUGU-UG-GAGAaGCaGCacu -5'
23577 3' -53.4 NC_005261.1 + 69290 0.68 0.924134
Target:  5'- cGCGCGCCUcguuCAGCgUC-UCGUCGa-- -3'
miRNA:   3'- -CGCGUGGGu---GUUGgAGaAGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 57977 0.71 0.768862
Target:  5'- aCGUACCUggcgcGCGGCggCUUCGUCGUGGc -3'
miRNA:   3'- cGCGUGGG-----UGUUGgaGAAGCAGCACU- -5'
23577 3' -53.4 NC_005261.1 + 47802 0.67 0.952911
Target:  5'- cGCGCGCCCGCccACgUCgaaCGUCGc-- -3'
miRNA:   3'- -CGCGUGGGUGu-UGgAGaa-GCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 62360 0.7 0.856801
Target:  5'- cGCGCGCCCACGgcGCCgUCggggccgcCGUCGg-- -3'
miRNA:   3'- -CGCGUGGGUGU--UGG-AGaa------GCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 65034 0.69 0.864566
Target:  5'- -gGCGCCCGgGGCCaaccUCGUCGUGu -3'
miRNA:   3'- cgCGUGGGUgUUGGaga-AGCAGCACu -5'
23577 3' -53.4 NC_005261.1 + 67254 0.69 0.864566
Target:  5'- cGCGCGCCaCGCGcuCUUCUUCGcCGUc- -3'
miRNA:   3'- -CGCGUGG-GUGUu-GGAGAAGCaGCAcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.