miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 3' -53.4 NC_005261.1 + 68306 0.67 0.929544
Target:  5'- cGCGgACCUcuGCGGCCgCUUCGaCGUGc -3'
miRNA:   3'- -CGCgUGGG--UGUUGGaGAAGCaGCACu -5'
23577 3' -53.4 NC_005261.1 + 85034 0.67 0.939623
Target:  5'- cCGCGCCC-CGGCCacgaUCGcCGUGAg -3'
miRNA:   3'- cGCGUGGGuGUUGGaga-AGCaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 117213 0.66 0.960582
Target:  5'- gGCGCGCCCGCuGCCUgggCGcCGa-- -3'
miRNA:   3'- -CGCGUGGGUGuUGGAgaaGCaGCacu -5'
23577 3' -53.4 NC_005261.1 + 68812 0.66 0.964074
Target:  5'- cGCGgACCCACAACgC-CUggGcCGUGGc -3'
miRNA:   3'- -CGCgUGGGUGUUG-GaGAagCaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 118862 0.69 0.872115
Target:  5'- gGCGCGCCCGCGGCC-CUggCcUCGg-- -3'
miRNA:   3'- -CGCGUGGGUGUUGGaGAa-GcAGCacu -5'
23577 3' -53.4 NC_005261.1 + 38061 0.68 0.918478
Target:  5'- cGgGCagGCCCACGGCCUggcCUUCaG-CGUGAa -3'
miRNA:   3'- -CgCG--UGGGUGUUGGA---GAAG-CaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 119209 0.67 0.948723
Target:  5'- cGCGCGCCCGCcauGGCC-CUgccggggCGagCGUGGc -3'
miRNA:   3'- -CGCGUGGGUG---UUGGaGAa------GCa-GCACU- -5'
23577 3' -53.4 NC_005261.1 + 92204 0.66 0.970397
Target:  5'- gGCGCAgCCGCcgaAGCCggcgUCGUCGg-- -3'
miRNA:   3'- -CGCGUgGGUG---UUGGaga-AGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 101728 0.68 0.918478
Target:  5'- aGCGCGCCCGCGAUCagggCcUCGcUCGg-- -3'
miRNA:   3'- -CGCGUGGGUGUUGGa---GaAGC-AGCacu -5'
23577 3' -53.4 NC_005261.1 + 119659 0.66 0.970397
Target:  5'- gGCGCGCgCCugGAgCUCUgguuccagcgCGUCGg-- -3'
miRNA:   3'- -CGCGUG-GGugUUgGAGAa---------GCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 69369 0.67 0.94338
Target:  5'- cGCGCGCgCugGACCUCgagaugaccgcCGUCcUGAg -3'
miRNA:   3'- -CGCGUGgGugUUGGAGaa---------GCAGcACU- -5'
23577 3' -53.4 NC_005261.1 + 92580 0.68 0.924134
Target:  5'- cGCGCGCCCACGcgcgagcgcaGCCgCUcgCGgcgCGUGc -3'
miRNA:   3'- -CGCGUGGGUGU----------UGGaGAa-GCa--GCACu -5'
23577 3' -53.4 NC_005261.1 + 3749 0.66 0.956863
Target:  5'- gGCGCACCgCGCcGCCUCUagCGccUCGcGGc -3'
miRNA:   3'- -CGCGUGG-GUGuUGGAGAa-GC--AGCaCU- -5'
23577 3' -53.4 NC_005261.1 + 83579 0.66 0.959122
Target:  5'- cGCgGCGCCCGCGGCCgccagcagcgCGUCGc-- -3'
miRNA:   3'- -CG-CGUGGGUGUUGGagaa------GCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 115958 0.66 0.96305
Target:  5'- aCGCGCCCAgcACCUCgUccuccgagguguagUCGUCGcUGAc -3'
miRNA:   3'- cGCGUGGGUguUGGAG-A--------------AGCAGC-ACU- -5'
23577 3' -53.4 NC_005261.1 + 42111 0.66 0.964074
Target:  5'- uGUGCcgGCCCAgCAGCCcggCcUCGUCGaUGAc -3'
miRNA:   3'- -CGCG--UGGGU-GUUGGa--GaAGCAGC-ACU- -5'
23577 3' -53.4 NC_005261.1 + 119961 0.71 0.787748
Target:  5'- cGCGCACCCGCcgUCUC--CGUCGa-- -3'
miRNA:   3'- -CGCGUGGGUGuuGGAGaaGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 125315 0.7 0.856801
Target:  5'- cGgGCGCuCCGCGGCCUCggCGUCc--- -3'
miRNA:   3'- -CgCGUG-GGUGUUGGAGaaGCAGcacu -5'
23577 3' -53.4 NC_005261.1 + 93693 0.68 0.900037
Target:  5'- gGgGCGCCgGCGgguGCCUCUuccuccUCGUCGUc- -3'
miRNA:   3'- -CgCGUGGgUGU---UGGAGA------AGCAGCAcu -5'
23577 3' -53.4 NC_005261.1 + 115367 0.68 0.912575
Target:  5'- uGCGCcUCCACGguuGCCgg--CGUCGUGGu -3'
miRNA:   3'- -CGCGuGGGUGU---UGGagaaGCAGCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.