miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 3' -53.4 NC_005261.1 + 88385 0.66 0.970397
Target:  5'- cGCGCGCCCAagguguACCUCgaCGgCGagGAg -3'
miRNA:   3'- -CGCGUGGGUgu----UGGAGaaGCaGCa-CU- -5'
23577 3' -53.4 NC_005261.1 + 119209 0.67 0.948723
Target:  5'- cGCGCGCCCGCcauGGCC-CUgccggggCGagCGUGGc -3'
miRNA:   3'- -CGCGUGGGUG---UUGGaGAa------GCa-GCACU- -5'
23577 3' -53.4 NC_005261.1 + 85034 0.67 0.939623
Target:  5'- cCGCGCCC-CGGCCacgaUCGcCGUGAg -3'
miRNA:   3'- cGCGUGGGuGUUGGaga-AGCaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 114452 1.11 0.003851
Target:  5'- uGCGCACCCACAACCUCUUCGUCGUGAc -3'
miRNA:   3'- -CGCGUGGGUGUUGGAGAAGCAGCACU- -5'
23577 3' -53.4 NC_005261.1 + 42111 0.66 0.964074
Target:  5'- uGUGCcgGCCCAgCAGCCcggCcUCGUCGaUGAc -3'
miRNA:   3'- -CGCG--UGGGU-GUUGGa--GaAGCAGC-ACU- -5'
23577 3' -53.4 NC_005261.1 + 105924 0.66 0.963394
Target:  5'- cGCGCGCCCACGccgcgcCCUCcgcgagcgcgcCGUCGaUGGc -3'
miRNA:   3'- -CGCGUGGGUGUu-----GGAGaa---------GCAGC-ACU- -5'
23577 3' -53.4 NC_005261.1 + 115958 0.66 0.96305
Target:  5'- aCGCGCCCAgcACCUCgUccuccgagguguagUCGUCGcUGAc -3'
miRNA:   3'- cGCGUGGGUguUGGAG-A--------------AGCAGC-ACU- -5'
23577 3' -53.4 NC_005261.1 + 47377 0.66 0.960582
Target:  5'- aGCGCGCgCACAACCg--UCGgggCGg-- -3'
miRNA:   3'- -CGCGUGgGUGUUGGagaAGCa--GCacu -5'
23577 3' -53.4 NC_005261.1 + 83579 0.66 0.959122
Target:  5'- cGCgGCGCCCGCGGCCgccagcagcgCGUCGc-- -3'
miRNA:   3'- -CG-CGUGGGUGUUGGagaa------GCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 69614 0.67 0.952911
Target:  5'- cGCGCGCCCGCcGCC-CggcaCGgCGUGc -3'
miRNA:   3'- -CGCGUGGGUGuUGGaGaa--GCaGCACu -5'
23577 3' -53.4 NC_005261.1 + 47640 0.66 0.956863
Target:  5'- cGCGCGCaCCGCGuCCUCcUCGaCGg-- -3'
miRNA:   3'- -CGCGUG-GGUGUuGGAGaAGCaGCacu -5'
23577 3' -53.4 NC_005261.1 + 117213 0.66 0.960582
Target:  5'- gGCGCGCCCGCuGCCUgggCGcCGa-- -3'
miRNA:   3'- -CGCGUGGGUGuUGGAgaaGCaGCacu -5'
23577 3' -53.4 NC_005261.1 + 119659 0.66 0.970397
Target:  5'- gGCGCGCgCCugGAgCUCUgguuccagcgCGUCGg-- -3'
miRNA:   3'- -CGCGUG-GGugUUgGAGAa---------GCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 3749 0.66 0.956863
Target:  5'- gGCGCACCgCGCcGCCUCUagCGccUCGcGGc -3'
miRNA:   3'- -CGCGUGG-GUGuUGGAGAa-GC--AGCaCU- -5'
23577 3' -53.4 NC_005261.1 + 92204 0.66 0.970397
Target:  5'- gGCGCAgCCGCcgaAGCCggcgUCGUCGg-- -3'
miRNA:   3'- -CGCGUgGGUG---UUGGaga-AGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 32589 0.66 0.960582
Target:  5'- cGCGUcCuCCGCGuCCUCcUCGUCGUc- -3'
miRNA:   3'- -CGCGuG-GGUGUuGGAGaAGCAGCAcu -5'
23577 3' -53.4 NC_005261.1 + 94613 0.67 0.952911
Target:  5'- cGCGCGCCCucGCcGCCgccggCgccgUCGUCGg-- -3'
miRNA:   3'- -CGCGUGGG--UGuUGGa----Ga---AGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 69369 0.67 0.94338
Target:  5'- cGCGCGCgCugGACCUCgagaugaccgcCGUCcUGAg -3'
miRNA:   3'- -CGCGUGgGugUUGGAGaa---------GCAGcACU- -5'
23577 3' -53.4 NC_005261.1 + 68812 0.66 0.964074
Target:  5'- cGCGgACCCACAACgC-CUggGcCGUGGc -3'
miRNA:   3'- -CGCgUGGGUGUUG-GaGAagCaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 106288 0.66 0.96305
Target:  5'- cGUGCaaacGCCguCGACCUCggcgagcaggucuucCGUCGUGAg -3'
miRNA:   3'- -CGCG----UGGguGUUGGAGaa-------------GCAGCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.