miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 3' -53.4 NC_005261.1 + 20300 0.68 0.900037
Target:  5'- cGCGCACgggCCGCAGCCggcCUUCGUUc--- -3'
miRNA:   3'- -CGCGUG---GGUGUUGGa--GAAGCAGcacu -5'
23577 3' -53.4 NC_005261.1 + 62360 0.7 0.856801
Target:  5'- cGCGCGCCCACGgcGCCgUCggggccgcCGUCGg-- -3'
miRNA:   3'- -CGCGUGGGUGU--UGG-AGaa------GCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 65034 0.69 0.864566
Target:  5'- -gGCGCCCGgGGCCaaccUCGUCGUGu -3'
miRNA:   3'- cgCGUGGGUgUUGGaga-AGCAGCACu -5'
23577 3' -53.4 NC_005261.1 + 67254 0.69 0.864566
Target:  5'- cGCGCGCCaCGCGcuCUUCUUCGcCGUc- -3'
miRNA:   3'- -CGCGUGG-GUGUu-GGAGAAGCaGCAcu -5'
23577 3' -53.4 NC_005261.1 + 36667 0.69 0.864566
Target:  5'- cGCGCGCCgagCGCAuCCUCggcgagGUCGUGGc -3'
miRNA:   3'- -CGCGUGG---GUGUuGGAGaag---CAGCACU- -5'
23577 3' -53.4 NC_005261.1 + 86208 0.69 0.879441
Target:  5'- gGCGUugGCCucguaCACGGCCUCcUCGUCGUc- -3'
miRNA:   3'- -CGCG--UGG-----GUGUUGGAGaAGCAGCAcu -5'
23577 3' -53.4 NC_005261.1 + 103325 0.69 0.879441
Target:  5'- cCGCGCCC-CGACCUCcgCGUCc--- -3'
miRNA:   3'- cGCGUGGGuGUUGGAGaaGCAGcacu -5'
23577 3' -53.4 NC_005261.1 + 66101 0.69 0.88654
Target:  5'- uCGCACCCGgGG-CUCUUCGggGUGGc -3'
miRNA:   3'- cGCGUGGGUgUUgGAGAAGCagCACU- -5'
23577 3' -53.4 NC_005261.1 + 37925 0.69 0.889315
Target:  5'- aGCGCGCCCGCGACgCggaCUUUGgggccuucugccgcuUCGUGc -3'
miRNA:   3'- -CGCGUGGGUGUUG-Ga--GAAGC---------------AGCACu -5'
23577 3' -53.4 NC_005261.1 + 6640 0.7 0.848826
Target:  5'- cGCGCGCgCGCGuagGCCUCggcCGUCGcGGg -3'
miRNA:   3'- -CGCGUGgGUGU---UGGAGaa-GCAGCaCU- -5'
23577 3' -53.4 NC_005261.1 + 36794 0.7 0.832273
Target:  5'- aGCGCuggaCCGCGccGCCUCggcggccgaCGUCGUGAc -3'
miRNA:   3'- -CGCGug--GGUGU--UGGAGaa-------GCAGCACU- -5'
23577 3' -53.4 NC_005261.1 + 53540 0.7 0.814969
Target:  5'- cGCGUGCCCGCGcGCCggCUUCGU-GUGc -3'
miRNA:   3'- -CGCGUGGGUGU-UGGa-GAAGCAgCACu -5'
23577 3' -53.4 NC_005261.1 + 61202 0.75 0.585376
Target:  5'- cCGCGCgCGCGGCCUCggCGUCGgcgagGAg -3'
miRNA:   3'- cGCGUGgGUGUUGGAGaaGCAGCa----CU- -5'
23577 3' -53.4 NC_005261.1 + 64563 0.74 0.616471
Target:  5'- cCGCGCCCGC--CCUCcgCGUCGUGc -3'
miRNA:   3'- cGCGUGGGUGuuGGAGaaGCAGCACu -5'
23577 3' -53.4 NC_005261.1 + 119055 0.73 0.678763
Target:  5'- cUGCGCCCgGCAGCUgCUUCG-CGUGAu -3'
miRNA:   3'- cGCGUGGG-UGUUGGaGAAGCaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 29502 0.72 0.759226
Target:  5'- gGCGCcgccgcugGCCCGC-GCgCUCUUCGcCGUGGc -3'
miRNA:   3'- -CGCG--------UGGGUGuUG-GAGAAGCaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 68875 0.72 0.759226
Target:  5'- aGCGCGCgCGCGGCCgcgUCGUCGc-- -3'
miRNA:   3'- -CGCGUGgGUGUUGGagaAGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 57977 0.71 0.768862
Target:  5'- aCGUACCUggcgcGCGGCggCUUCGUCGUGGc -3'
miRNA:   3'- cGCGUGGG-----UGUUGgaGAAGCAGCACU- -5'
23577 3' -53.4 NC_005261.1 + 43250 0.71 0.768862
Target:  5'- gGCGCGCgCGgGGCCUacgCGUCGUGc -3'
miRNA:   3'- -CGCGUGgGUgUUGGAgaaGCAGCACu -5'
23577 3' -53.4 NC_005261.1 + 22122 0.71 0.778373
Target:  5'- aGCGCuCCUACuACCcgaUCUUCGUCGcgGAc -3'
miRNA:   3'- -CGCGuGGGUGuUGG---AGAAGCAGCa-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.