miRNA display CGI


Results 61 - 80 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 5' -54.2 NC_005261.1 + 22538 0.67 0.919898
Target:  5'- uACaCGACGGacacggacaugauCCUCAUgGGCUGCGAcaUGAu -3'
miRNA:   3'- -UG-GUUGCU-------------GGAGUAgUCGGCGCU--ACU- -5'
23577 5' -54.2 NC_005261.1 + 86586 0.67 0.914635
Target:  5'- aGCCGGCGgcggcGCCguccuuggCGUCGGCCGCGc--- -3'
miRNA:   3'- -UGGUUGC-----UGGa-------GUAGUCGGCGCuacu -5'
23577 5' -54.2 NC_005261.1 + 84287 0.67 0.914635
Target:  5'- cGCCGGCGGCCcCGgcccCGGCgGCGccGAa -3'
miRNA:   3'- -UGGUUGCUGGaGUa---GUCGgCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 86275 0.67 0.914635
Target:  5'- aGCgCGGCGGCgUCGUCGGUgGCGccGGc -3'
miRNA:   3'- -UG-GUUGCUGgAGUAGUCGgCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 87448 0.67 0.914635
Target:  5'- cGCCGggGCGGCCg---CcGCCGCGGUGu -3'
miRNA:   3'- -UGGU--UGCUGGaguaGuCGGCGCUACu -5'
23577 5' -54.2 NC_005261.1 + 61169 0.67 0.914635
Target:  5'- cUCGACGGCCUCuUCguGGCCGuCGAg-- -3'
miRNA:   3'- uGGUUGCUGGAGuAG--UCGGC-GCUacu -5'
23577 5' -54.2 NC_005261.1 + 70877 0.67 0.912837
Target:  5'- uGCCGGCGGCCUUcgCGGgcccggcgcuguucCUGCGGcUGAg -3'
miRNA:   3'- -UGGUUGCUGGAGuaGUC--------------GGCGCU-ACU- -5'
23577 5' -54.2 NC_005261.1 + 106528 0.67 0.908554
Target:  5'- cGCCAGCaccGCCUCcUCGGCgGCGGc-- -3'
miRNA:   3'- -UGGUUGc--UGGAGuAGUCGgCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 98715 0.67 0.908554
Target:  5'- gGCCGGggucCGGCCUUGggggcacgCGGCCGCGcgGGc -3'
miRNA:   3'- -UGGUU----GCUGGAGUa-------GUCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 107129 0.67 0.908554
Target:  5'- cGCCGGCGACggCGcccaCGGCCGCGGccaUGGa -3'
miRNA:   3'- -UGGUUGCUGgaGUa---GUCGGCGCU---ACU- -5'
23577 5' -54.2 NC_005261.1 + 4823 0.67 0.908554
Target:  5'- cACCAGCGagcggGCCUUGUUuugGGCCGCGcgcccGUGGg -3'
miRNA:   3'- -UGGUUGC-----UGGAGUAG---UCGGCGC-----UACU- -5'
23577 5' -54.2 NC_005261.1 + 37525 0.67 0.908554
Target:  5'- gGCCGcggcucggGCGGCgCgcgCcgCGGCCGCGGUGc -3'
miRNA:   3'- -UGGU--------UGCUG-Ga--GuaGUCGGCGCUACu -5'
23577 5' -54.2 NC_005261.1 + 117270 0.67 0.908554
Target:  5'- cGCCGcgguccACGACCUCGUaaacCAGCCG-GAgGAg -3'
miRNA:   3'- -UGGU------UGCUGGAGUA----GUCGGCgCUaCU- -5'
23577 5' -54.2 NC_005261.1 + 97213 0.67 0.908554
Target:  5'- -aCGACGACCUCGUCu-UCGCGGcccUGGa -3'
miRNA:   3'- ugGUUGCUGGAGUAGucGGCGCU---ACU- -5'
23577 5' -54.2 NC_005261.1 + 43606 0.67 0.902228
Target:  5'- cGCCGACGACggCGcCGGCgGCGgcGAg -3'
miRNA:   3'- -UGGUUGCUGgaGUaGUCGgCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 92212 0.67 0.902228
Target:  5'- cGCCGAagcCGGCgUCGUCGGCCccgccgagcGCGcgGAu -3'
miRNA:   3'- -UGGUU---GCUGgAGUAGUCGG---------CGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 53361 0.67 0.902228
Target:  5'- cGCUuuCGGCCgccgCccCGGCCGCGGUGu -3'
miRNA:   3'- -UGGuuGCUGGa---GuaGUCGGCGCUACu -5'
23577 5' -54.2 NC_005261.1 + 90995 0.67 0.902228
Target:  5'- uACCu-CGGCCUCGUC-GCCGgcggcaagaugcUGAUGAa -3'
miRNA:   3'- -UGGuuGCUGGAGUAGuCGGC------------GCUACU- -5'
23577 5' -54.2 NC_005261.1 + 99628 0.67 0.902228
Target:  5'- gGCCAAC-ACC-CGcCAGCCGCGGg-- -3'
miRNA:   3'- -UGGUUGcUGGaGUaGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 53354 0.67 0.898315
Target:  5'- cGCCAGCcACCUCGugcgcUCGGucauggccacgcggcCCGCGGUGGu -3'
miRNA:   3'- -UGGUUGcUGGAGU-----AGUC---------------GGCGCUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.