miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 5' -54.2 NC_005261.1 + 37129 0.66 0.936484
Target:  5'- cGCCAaggcgcgcGCGGCCgcgcugCAggCGGCCGCGGg-- -3'
miRNA:   3'- -UGGU--------UGCUGGa-----GUa-GUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 93044 0.66 0.936484
Target:  5'- gGCCGGCauGGCCUCAcacUCGGC-GCGGUa- -3'
miRNA:   3'- -UGGUUG--CUGGAGU---AGUCGgCGCUAcu -5'
23577 5' -54.2 NC_005261.1 + 102678 0.66 0.931394
Target:  5'- cCCAGCG-CCgCGUCcGCCGCGGc-- -3'
miRNA:   3'- uGGUUGCuGGaGUAGuCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 42946 0.66 0.931394
Target:  5'- cCCAGCuGGCC--AUCAGCCGCaaGAUGu -3'
miRNA:   3'- uGGUUG-CUGGagUAGUCGGCG--CUACu -5'
23577 5' -54.2 NC_005261.1 + 84459 0.66 0.931394
Target:  5'- -gCGACGACCcggUCGUUuGCCGCGcgGc -3'
miRNA:   3'- ugGUUGCUGG---AGUAGuCGGCGCuaCu -5'
23577 5' -54.2 NC_005261.1 + 82970 0.66 0.931394
Target:  5'- cGCCAgggggcGCaGACCUCcucgcggCGGCUGCGGUGc -3'
miRNA:   3'- -UGGU------UG-CUGGAGua-----GUCGGCGCUACu -5'
23577 5' -54.2 NC_005261.1 + 39494 0.66 0.931394
Target:  5'- gGCCAACGcCCgcg-CGGCCGCG-UGc -3'
miRNA:   3'- -UGGUUGCuGGaguaGUCGGCGCuACu -5'
23577 5' -54.2 NC_005261.1 + 84953 0.66 0.926057
Target:  5'- cUCGGCGGCCgccgaggCGUCGGgcgcguCCGCGAUGc -3'
miRNA:   3'- uGGUUGCUGGa------GUAGUC------GGCGCUACu -5'
23577 5' -54.2 NC_005261.1 + 40462 0.66 0.926057
Target:  5'- cACaCGGCGACCUUGUCgaggcucaGGCCcugggagcggGCGAUGGu -3'
miRNA:   3'- -UG-GUUGCUGGAGUAG--------UCGG----------CGCUACU- -5'
23577 5' -54.2 NC_005261.1 + 37863 0.66 0.926057
Target:  5'- --aGGCGGCCUCgGUC-GCCGCcGUGAa -3'
miRNA:   3'- uggUUGCUGGAG-UAGuCGGCGcUACU- -5'
23577 5' -54.2 NC_005261.1 + 84990 0.66 0.926057
Target:  5'- cGCCGGCGcACCcagugCAUgaCGGCCGCGGg-- -3'
miRNA:   3'- -UGGUUGC-UGGa----GUA--GUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 66634 0.67 0.92047
Target:  5'- gGCCGACGAgaCCUgcguccCGUCGGCCGCc---- -3'
miRNA:   3'- -UGGUUGCU--GGA------GUAGUCGGCGcuacu -5'
23577 5' -54.2 NC_005261.1 + 29838 0.67 0.92047
Target:  5'- cGCCGAgcugcgcgcCGugCUCGcCGGCCGCGcgGc -3'
miRNA:   3'- -UGGUU---------GCugGAGUaGUCGGCGCuaCu -5'
23577 5' -54.2 NC_005261.1 + 68977 0.67 0.92047
Target:  5'- cGCCAccGCGGcCCUUuUCgGGCCGCGcgGGc -3'
miRNA:   3'- -UGGU--UGCU-GGAGuAG-UCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 5831 0.67 0.92047
Target:  5'- gGCCAggcgucggcgGCGGCCUCGgggaaCAgcGCCGCGAg-- -3'
miRNA:   3'- -UGGU----------UGCUGGAGUa----GU--CGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 89432 0.67 0.92047
Target:  5'- cGCCGcgcACGGCCUCAcggAGCCgGCGAUc- -3'
miRNA:   3'- -UGGU---UGCUGGAGUag-UCGG-CGCUAcu -5'
23577 5' -54.2 NC_005261.1 + 134355 0.67 0.92047
Target:  5'- cGCCGAgcugcgcgcCGugCUCGcCGGCCGCGcgGc -3'
miRNA:   3'- -UGGUU---------GCugGAGUaGUCGGCGCuaCu -5'
23577 5' -54.2 NC_005261.1 + 74899 0.67 0.92047
Target:  5'- gUCGGCGGCCcgCGcUGGCCGCGcgGGg -3'
miRNA:   3'- uGGUUGCUGGa-GUaGUCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 101084 0.67 0.92047
Target:  5'- cGCCcGCGGCCgccugCAgcgCGGCCGCGc--- -3'
miRNA:   3'- -UGGuUGCUGGa----GUa--GUCGGCGCuacu -5'
23577 5' -54.2 NC_005261.1 + 22538 0.67 0.919898
Target:  5'- uACaCGACGGacacggacaugauCCUCAUgGGCUGCGAcaUGAu -3'
miRNA:   3'- -UG-GUUGCU-------------GGAGUAgUCGGCGCU--ACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.