miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 5' -54.2 NC_005261.1 + 38936 0.7 0.79973
Target:  5'- aGCCGGCGGCCgggCG--GGCCGCGGc-- -3'
miRNA:   3'- -UGGUUGCUGGa--GUagUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 98851 0.7 0.79973
Target:  5'- cGCCAGggcCGcCCUCccCGGCCGcCGAUGAg -3'
miRNA:   3'- -UGGUU---GCuGGAGuaGUCGGC-GCUACU- -5'
23577 5' -54.2 NC_005261.1 + 18241 0.69 0.808784
Target:  5'- aGCCGGCGcCCUCcagcGUCGGCCGgGGc-- -3'
miRNA:   3'- -UGGUUGCuGGAG----UAGUCGGCgCUacu -5'
23577 5' -54.2 NC_005261.1 + 122088 0.69 0.815908
Target:  5'- uGCCGGuCGGCaUCGgggucggcaucgCGGCCGCGGUGAu -3'
miRNA:   3'- -UGGUU-GCUGgAGUa-----------GUCGGCGCUACU- -5'
23577 5' -54.2 NC_005261.1 + 101550 0.69 0.817671
Target:  5'- gGCCGccACGACCUCGccgaggaugcgcUCGGCgCGCGccGUGGc -3'
miRNA:   3'- -UGGU--UGCUGGAGU------------AGUCG-GCGC--UACU- -5'
23577 5' -54.2 NC_005261.1 + 43367 0.69 0.817671
Target:  5'- uGCCGcuGCGGCggCAUCGGCCucGCGGUGc -3'
miRNA:   3'- -UGGU--UGCUGgaGUAGUCGG--CGCUACu -5'
23577 5' -54.2 NC_005261.1 + 36790 0.69 0.817671
Target:  5'- gGCCAGCGcuggaccgcgccGCCUCggCGGCCGaCGucGUGAc -3'
miRNA:   3'- -UGGUUGC------------UGGAGuaGUCGGC-GC--UACU- -5'
23577 5' -54.2 NC_005261.1 + 63981 0.69 0.825521
Target:  5'- cGCCAGCGGgCUCAgcuugaagUAGCCGCccaucagcgcguaGGUGAg -3'
miRNA:   3'- -UGGUUGCUgGAGUa-------GUCGGCG-------------CUACU- -5'
23577 5' -54.2 NC_005261.1 + 45900 0.69 0.826384
Target:  5'- gACCggUGGCCgcggAUgGGCCGCGcgGAc -3'
miRNA:   3'- -UGGuuGCUGGag--UAgUCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 1344 0.69 0.826384
Target:  5'- cGCCAguAC-ACUUCAUCGGCCGCGc--- -3'
miRNA:   3'- -UGGU--UGcUGGAGUAGUCGGCGCuacu -5'
23577 5' -54.2 NC_005261.1 + 123313 0.69 0.834913
Target:  5'- cACgAGCGGCCcaagCAcCGGCCGCGAa-- -3'
miRNA:   3'- -UGgUUGCUGGa---GUaGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 105710 0.69 0.834913
Target:  5'- cGCCAGCGACgUCu---GCCGCGGc-- -3'
miRNA:   3'- -UGGUUGCUGgAGuaguCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 132647 0.69 0.834913
Target:  5'- gGCgCGGCGGCC-CuagCGGCCGCGuGUGGg -3'
miRNA:   3'- -UG-GUUGCUGGaGua-GUCGGCGC-UACU- -5'
23577 5' -54.2 NC_005261.1 + 87125 0.69 0.834913
Target:  5'- gGCC-GCGACgUCAaaGGCCGCGAcGGc -3'
miRNA:   3'- -UGGuUGCUGgAGUagUCGGCGCUaCU- -5'
23577 5' -54.2 NC_005261.1 + 18694 0.69 0.834913
Target:  5'- -gCGGCGggGCCUUGcUCGGCCGCGggGAc -3'
miRNA:   3'- ugGUUGC--UGGAGU-AGUCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 5018 0.69 0.84325
Target:  5'- cCCAGCucGGCCUCGaCGGCgucgGCGAUGAa -3'
miRNA:   3'- uGGUUG--CUGGAGUaGUCGg---CGCUACU- -5'
23577 5' -54.2 NC_005261.1 + 114097 0.69 0.84325
Target:  5'- uACCGcuuucuguucGCGuuCCUC-UCGGCCGcCGAUGAc -3'
miRNA:   3'- -UGGU----------UGCu-GGAGuAGUCGGC-GCUACU- -5'
23577 5' -54.2 NC_005261.1 + 41094 0.69 0.84325
Target:  5'- cGCCAGuCGACCgCGUCGuCCGCGgcGGg -3'
miRNA:   3'- -UGGUU-GCUGGaGUAGUcGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 131984 0.69 0.851388
Target:  5'- gGCCAccaGGCCUUcgCAGUCGCGGa-- -3'
miRNA:   3'- -UGGUug-CUGGAGuaGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 38204 0.69 0.851388
Target:  5'- cGCCcGCgGACCUUGUCguGGCCGCGcucAUGGg -3'
miRNA:   3'- -UGGuUG-CUGGAGUAG--UCGGCGC---UACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.