miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 5' -54.2 NC_005261.1 + 84628 0.73 0.608643
Target:  5'- gGCC-ACGGCCUCGUCGGuCCGC--UGGg -3'
miRNA:   3'- -UGGuUGCUGGAGUAGUC-GGCGcuACU- -5'
23577 5' -54.2 NC_005261.1 + 132715 0.73 0.59824
Target:  5'- aGCCGGCGGCCUCGcCGccguGCCGCGGc-- -3'
miRNA:   3'- -UGGUUGCUGGAGUaGU----CGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 22055 0.73 0.59824
Target:  5'- cCCAGCGGCgUCGgggacgCGGCCGCGAc-- -3'
miRNA:   3'- uGGUUGCUGgAGUa-----GUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 74830 0.74 0.567216
Target:  5'- cGCCGACGACCUCAUguucgacaCGGCCaggGCGAc-- -3'
miRNA:   3'- -UGGUUGCUGGAGUA--------GUCGG---CGCUacu -5'
23577 5' -54.2 NC_005261.1 + 95058 0.74 0.55696
Target:  5'- cGCCGGCGGCgCcgUAUCGcGCCGCGAUGu -3'
miRNA:   3'- -UGGUUGCUG-Ga-GUAGU-CGGCGCUACu -5'
23577 5' -54.2 NC_005261.1 + 47496 0.71 0.752282
Target:  5'- cGCCAGCG-CCUCAggcgCGGCCcaGCGGUc- -3'
miRNA:   3'- -UGGUUGCuGGAGUa---GUCGG--CGCUAcu -5'
23577 5' -54.2 NC_005261.1 + 103211 0.7 0.771659
Target:  5'- cGCCAGCGACCgagaCGcCGGCCGCa---- -3'
miRNA:   3'- -UGGUUGCUGGa---GUaGUCGGCGcuacu -5'
23577 5' -54.2 NC_005261.1 + 38204 0.69 0.851388
Target:  5'- cGCCcGCgGACCUUGUCguGGCCGCGcucAUGGg -3'
miRNA:   3'- -UGGuUG-CUGGAGUAG--UCGGCGC---UACU- -5'
23577 5' -54.2 NC_005261.1 + 5018 0.69 0.84325
Target:  5'- cCCAGCucGGCCUCGaCGGCgucgGCGAUGAa -3'
miRNA:   3'- uGGUUG--CUGGAGUaGUCGg---CGCUACU- -5'
23577 5' -54.2 NC_005261.1 + 18694 0.69 0.834913
Target:  5'- -gCGGCGggGCCUUGcUCGGCCGCGggGAc -3'
miRNA:   3'- ugGUUGC--UGGAGU-AGUCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 87125 0.69 0.834913
Target:  5'- gGCC-GCGACgUCAaaGGCCGCGAcGGc -3'
miRNA:   3'- -UGGuUGCUGgAGUagUCGGCGCUaCU- -5'
23577 5' -54.2 NC_005261.1 + 1344 0.69 0.826384
Target:  5'- cGCCAguAC-ACUUCAUCGGCCGCGc--- -3'
miRNA:   3'- -UGGU--UGcUGGAGUAGUCGGCGCuacu -5'
23577 5' -54.2 NC_005261.1 + 45900 0.69 0.826384
Target:  5'- gACCggUGGCCgcggAUgGGCCGCGcgGAc -3'
miRNA:   3'- -UGGuuGCUGGag--UAgUCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 36790 0.69 0.817671
Target:  5'- gGCCAGCGcuggaccgcgccGCCUCggCGGCCGaCGucGUGAc -3'
miRNA:   3'- -UGGUUGC------------UGGAGuaGUCGGC-GC--UACU- -5'
23577 5' -54.2 NC_005261.1 + 122088 0.69 0.815908
Target:  5'- uGCCGGuCGGCaUCGgggucggcaucgCGGCCGCGGUGAu -3'
miRNA:   3'- -UGGUU-GCUGgAGUa-----------GUCGGCGCUACU- -5'
23577 5' -54.2 NC_005261.1 + 18241 0.69 0.808784
Target:  5'- aGCCGGCGcCCUCcagcGUCGGCCGgGGc-- -3'
miRNA:   3'- -UGGUUGCuGGAG----UAGUCGGCgCUacu -5'
23577 5' -54.2 NC_005261.1 + 98851 0.7 0.79973
Target:  5'- cGCCAGggcCGcCCUCccCGGCCGcCGAUGAg -3'
miRNA:   3'- -UGGUU---GCuGGAGuaGUCGGC-GCUACU- -5'
23577 5' -54.2 NC_005261.1 + 50850 0.7 0.790518
Target:  5'- -aCGACGGCCgaggaCAUCuGCCGCGcgGUGGg -3'
miRNA:   3'- ugGUUGCUGGa----GUAGuCGGCGC--UACU- -5'
23577 5' -54.2 NC_005261.1 + 114286 0.7 0.790518
Target:  5'- uGCCGACGACCcCGaaacCcGCCGCGAggUGAg -3'
miRNA:   3'- -UGGUUGCUGGaGUa---GuCGGCGCU--ACU- -5'
23577 5' -54.2 NC_005261.1 + 122934 0.7 0.781157
Target:  5'- uCCGACGACC-CGgaGGCCGCGAc-- -3'
miRNA:   3'- uGGUUGCUGGaGUagUCGGCGCUacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.