miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 5' -54.2 NC_005261.1 + 77935 0.66 0.945923
Target:  5'- aGCCGACuGCCUgCG--GGCCGCGggGGc -3'
miRNA:   3'- -UGGUUGcUGGA-GUagUCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 25082 0.66 0.945923
Target:  5'- cGCuCGGCGAUCUCcacguUCAGCCGCc---- -3'
miRNA:   3'- -UG-GUUGCUGGAGu----AGUCGGCGcuacu -5'
23577 5' -54.2 NC_005261.1 + 96612 0.66 0.945923
Target:  5'- cGCCGAgGGCCg---CAGCCGCuuuGUGGu -3'
miRNA:   3'- -UGGUUgCUGGaguaGUCGGCGc--UACU- -5'
23577 5' -54.2 NC_005261.1 + 75015 0.66 0.945923
Target:  5'- gGCCAAgGACCgcugCAUgAGCCG-GcUGAu -3'
miRNA:   3'- -UGGUUgCUGGa---GUAgUCGGCgCuACU- -5'
23577 5' -54.2 NC_005261.1 + 22369 0.66 0.945923
Target:  5'- uGCCgGGCGcGCCUCGgcgggGGCCGCGcgGGc -3'
miRNA:   3'- -UGG-UUGC-UGGAGUag---UCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 113877 0.66 0.945475
Target:  5'- cGCCGACGAuCCcCGggAGCCGCauugcgaGGUGAg -3'
miRNA:   3'- -UGGUUGCU-GGaGUagUCGGCG-------CUACU- -5'
23577 5' -54.2 NC_005261.1 + 93976 0.66 0.941327
Target:  5'- cCCcGCGcGCCgcggCGUCGGCCGCGcgcUGGg -3'
miRNA:   3'- uGGuUGC-UGGa---GUAGUCGGCGCu--ACU- -5'
23577 5' -54.2 NC_005261.1 + 134560 0.66 0.941327
Target:  5'- gGCC-GCGGCCUgc-CGGCCGCGGc-- -3'
miRNA:   3'- -UGGuUGCUGGAguaGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 6157 0.66 0.941327
Target:  5'- -gCAGCGGCgaCggCGGCCGCGAc-- -3'
miRNA:   3'- ugGUUGCUGgaGuaGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 19797 0.66 0.936484
Target:  5'- cGCCGcgGCGGCgUCcgCGGCgGCGAc-- -3'
miRNA:   3'- -UGGU--UGCUGgAGuaGUCGgCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 103945 0.66 0.936484
Target:  5'- cCCGGCGuCCcCGcCGGCCGCcGUGAg -3'
miRNA:   3'- uGGUUGCuGGaGUaGUCGGCGcUACU- -5'
23577 5' -54.2 NC_005261.1 + 70877 0.67 0.912837
Target:  5'- uGCCGGCGGCCUUcgCGGgcccggcgcuguucCUGCGGcUGAg -3'
miRNA:   3'- -UGGUUGCUGGAGuaGUC--------------GGCGCU-ACU- -5'
23577 5' -54.2 NC_005261.1 + 117270 0.67 0.908554
Target:  5'- cGCCGcgguccACGACCUCGUaaacCAGCCG-GAgGAg -3'
miRNA:   3'- -UGGU------UGCUGGAGUA----GUCGGCgCUaCU- -5'
23577 5' -54.2 NC_005261.1 + 97213 0.67 0.908554
Target:  5'- -aCGACGACCUCGUCu-UCGCGGcccUGGa -3'
miRNA:   3'- ugGUUGCUGGAGUAGucGGCGCU---ACU- -5'
23577 5' -54.2 NC_005261.1 + 37525 0.67 0.908554
Target:  5'- gGCCGcggcucggGCGGCgCgcgCcgCGGCCGCGGUGc -3'
miRNA:   3'- -UGGU--------UGCUG-Ga--GuaGUCGGCGCUACu -5'
23577 5' -54.2 NC_005261.1 + 4823 0.67 0.908554
Target:  5'- cACCAGCGagcggGCCUUGUUuugGGCCGCGcgcccGUGGg -3'
miRNA:   3'- -UGGUUGC-----UGGAGUAG---UCGGCGC-----UACU- -5'
23577 5' -54.2 NC_005261.1 + 43606 0.67 0.902228
Target:  5'- cGCCGACGACggCGcCGGCgGCGgcGAg -3'
miRNA:   3'- -UGGUUGCUGgaGUaGUCGgCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 99628 0.67 0.902228
Target:  5'- gGCCAAC-ACC-CGcCAGCCGCGGg-- -3'
miRNA:   3'- -UGGUUGcUGGaGUaGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 134355 0.67 0.92047
Target:  5'- cGCCGAgcugcgcgcCGugCUCGcCGGCCGCGcgGc -3'
miRNA:   3'- -UGGUU---------GCugGAGUaGUCGGCGCuaCu -5'
23577 5' -54.2 NC_005261.1 + 86275 0.67 0.914635
Target:  5'- aGCgCGGCGGCgUCGUCGGUgGCGccGGc -3'
miRNA:   3'- -UG-GUUGCUGgAGUAGUCGgCGCuaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.