miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 5' -54.2 NC_005261.1 + 35080 0.71 0.732466
Target:  5'- cGCCcccuCGcCCUCGg-AGCCGCGGUGAg -3'
miRNA:   3'- -UGGuu--GCuGGAGUagUCGGCGCUACU- -5'
23577 5' -54.2 NC_005261.1 + 35282 0.66 0.936484
Target:  5'- cGCCcGCGGCCgccgCcgCAGCgGCGgcGGc -3'
miRNA:   3'- -UGGuUGCUGGa---GuaGUCGgCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 36790 0.69 0.817671
Target:  5'- gGCCAGCGcuggaccgcgccGCCUCggCGGCCGaCGucGUGAc -3'
miRNA:   3'- -UGGUUGC------------UGGAGuaGUCGGC-GC--UACU- -5'
23577 5' -54.2 NC_005261.1 + 37129 0.66 0.936484
Target:  5'- cGCCAaggcgcgcGCGGCCgcgcugCAggCGGCCGCGGg-- -3'
miRNA:   3'- -UGGU--------UGCUGGa-----GUa-GUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 37525 0.67 0.908554
Target:  5'- gGCCGcggcucggGCGGCgCgcgCcgCGGCCGCGGUGc -3'
miRNA:   3'- -UGGU--------UGCUG-Ga--GuaGUCGGCGCUACu -5'
23577 5' -54.2 NC_005261.1 + 37863 0.66 0.926057
Target:  5'- --aGGCGGCCUCgGUC-GCCGCcGUGAa -3'
miRNA:   3'- uggUUGCUGGAG-UAGuCGGCGcUACU- -5'
23577 5' -54.2 NC_005261.1 + 38204 0.69 0.851388
Target:  5'- cGCCcGCgGACCUUGUCguGGCCGCGcucAUGGg -3'
miRNA:   3'- -UGGuUG-CUGGAGUAG--UCGGCGC---UACU- -5'
23577 5' -54.2 NC_005261.1 + 38936 0.7 0.79973
Target:  5'- aGCCGGCGGCCgggCG--GGCCGCGGc-- -3'
miRNA:   3'- -UGGUUGCUGGa--GUagUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 39363 0.68 0.867037
Target:  5'- -gCAGCcGCCUCAUCGGCgGcCGggGAg -3'
miRNA:   3'- ugGUUGcUGGAGUAGUCGgC-GCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 39494 0.66 0.931394
Target:  5'- gGCCAACGcCCgcg-CGGCCGCG-UGc -3'
miRNA:   3'- -UGGUUGCuGGaguaGUCGGCGCuACu -5'
23577 5' -54.2 NC_005261.1 + 40098 0.68 0.881809
Target:  5'- cGCCGACGGCCgccgguGCCGCGGc-- -3'
miRNA:   3'- -UGGUUGCUGGaguaguCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 40462 0.66 0.926057
Target:  5'- cACaCGGCGACCUUGUCgaggcucaGGCCcugggagcggGCGAUGGu -3'
miRNA:   3'- -UG-GUUGCUGGAGUAG--------UCGG----------CGCUACU- -5'
23577 5' -54.2 NC_005261.1 + 41015 0.68 0.881809
Target:  5'- cGCCAGCG-CCUCcgagcgUGGCCGCGGc-- -3'
miRNA:   3'- -UGGUUGCuGGAGua----GUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 41093 0.68 0.881809
Target:  5'- cGCCAGCG-CCUCcgagcgUGGCCGCGGc-- -3'
miRNA:   3'- -UGGUUGCuGGAGua----GUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 41094 0.69 0.84325
Target:  5'- cGCCAGuCGACCgCGUCGuCCGCGgcGGg -3'
miRNA:   3'- -UGGUU-GCUGGaGUAGUcGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 41223 0.68 0.881092
Target:  5'- cCCGACGGCC-CGcccaauggcgcgcUUAGCCGCGccGAg -3'
miRNA:   3'- uGGUUGCUGGaGU-------------AGUCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 42629 0.7 0.79973
Target:  5'- uCCAGCGGggaCUCGgccgccgCGGCCGCGcgGAa -3'
miRNA:   3'- uGGUUGCUg--GAGUa------GUCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 42946 0.66 0.931394
Target:  5'- cCCAGCuGGCC--AUCAGCCGCaaGAUGu -3'
miRNA:   3'- uGGUUG-CUGGagUAGUCGGCG--CUACu -5'
23577 5' -54.2 NC_005261.1 + 43367 0.69 0.817671
Target:  5'- uGCCGcuGCGGCggCAUCGGCCucGCGGUGc -3'
miRNA:   3'- -UGGU--UGCUGgaGUAGUCGG--CGCUACu -5'
23577 5' -54.2 NC_005261.1 + 43412 0.7 0.781157
Target:  5'- cGCCGgggGCGGCCUCcgCcGCCgGCGggGAg -3'
miRNA:   3'- -UGGU---UGCUGGAGuaGuCGG-CGCuaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.