miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 5' -54.2 NC_005261.1 + 19978 0.68 0.888852
Target:  5'- -gCAGCGACCgcccuaUCGUCcccGGCCGCGGccccUGAc -3'
miRNA:   3'- ugGUUGCUGG------AGUAG---UCGGCGCU----ACU- -5'
23577 5' -54.2 NC_005261.1 + 22055 0.73 0.59824
Target:  5'- cCCAGCGGCgUCGgggacgCGGCCGCGAc-- -3'
miRNA:   3'- uGGUUGCUGgAGUa-----GUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 22369 0.66 0.945923
Target:  5'- uGCCgGGCGcGCCUCGgcgggGGCCGCGcgGGc -3'
miRNA:   3'- -UGG-UUGC-UGGAGUag---UCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 22538 0.67 0.919898
Target:  5'- uACaCGACGGacacggacaugauCCUCAUgGGCUGCGAcaUGAu -3'
miRNA:   3'- -UG-GUUGCU-------------GGAGUAgUCGGCGCU--ACU- -5'
23577 5' -54.2 NC_005261.1 + 22682 0.68 0.881809
Target:  5'- uGCCAcACgGACCUgCAcCAGCCGcCGAUGc -3'
miRNA:   3'- -UGGU-UG-CUGGA-GUaGUCGGC-GCUACu -5'
23577 5' -54.2 NC_005261.1 + 23735 0.68 0.888852
Target:  5'- ---cACGGCCUCAUC-GCgGCuGAUGAg -3'
miRNA:   3'- ugguUGCUGGAGUAGuCGgCG-CUACU- -5'
23577 5' -54.2 NC_005261.1 + 24382 0.67 0.895659
Target:  5'- cCCggUGGgCUCGUCGGCgGCGGg-- -3'
miRNA:   3'- uGGuuGCUgGAGUAGUCGgCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 25082 0.66 0.945923
Target:  5'- cGCuCGGCGAUCUCcacguUCAGCCGCc---- -3'
miRNA:   3'- -UG-GUUGCUGGAGu----AGUCGGCGcuacu -5'
23577 5' -54.2 NC_005261.1 + 26052 0.66 0.950277
Target:  5'- gGCCAGCGAgCCccgCGcgCGGCCgGCGAaGAg -3'
miRNA:   3'- -UGGUUGCU-GGa--GUa-GUCGG-CGCUaCU- -5'
23577 5' -54.2 NC_005261.1 + 27608 0.66 0.950277
Target:  5'- cGCCGGCGGgCUC--CAGCCGCa---- -3'
miRNA:   3'- -UGGUUGCUgGAGuaGUCGGCGcuacu -5'
23577 5' -54.2 NC_005261.1 + 28197 0.74 0.567216
Target:  5'- aGCCGGCGGCCUCGccgccgCuGCCGCGGc-- -3'
miRNA:   3'- -UGGUUGCUGGAGUa-----GuCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 28490 0.75 0.496766
Target:  5'- gACCuguACGACCUCAUCgAGuCCGCGGa-- -3'
miRNA:   3'- -UGGu--UGCUGGAGUAG-UC-GGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 28900 0.68 0.881809
Target:  5'- gGCCGcCGACC-CcgCGGCCGCGcucgcgGAg -3'
miRNA:   3'- -UGGUuGCUGGaGuaGUCGGCGCua----CU- -5'
23577 5' -54.2 NC_005261.1 + 29838 0.67 0.92047
Target:  5'- cGCCGAgcugcgcgcCGugCUCGcCGGCCGCGcgGc -3'
miRNA:   3'- -UGGUU---------GCugGAGUaGUCGGCGCuaCu -5'
23577 5' -54.2 NC_005261.1 + 30042 0.66 0.941327
Target:  5'- gGCC-GCGGCCUgc-CGGCCGCGGc-- -3'
miRNA:   3'- -UGGuUGCUGGAguaGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 31466 0.72 0.66077
Target:  5'- cGCCGGCGGCCUgAgUGGCCGcCGGUGc -3'
miRNA:   3'- -UGGUUGCUGGAgUaGUCGGC-GCUACu -5'
23577 5' -54.2 NC_005261.1 + 32002 0.67 0.895659
Target:  5'- gGCgCGGCGGCCgcgcCAggCGGCCGCGGg-- -3'
miRNA:   3'- -UG-GUUGCUGGa---GUa-GUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 34055 0.66 0.950277
Target:  5'- cCCGACGACCcgCGcgCGGCgcccgcggacggCGCGGUGGc -3'
miRNA:   3'- uGGUUGCUGGa-GUa-GUCG------------GCGCUACU- -5'
23577 5' -54.2 NC_005261.1 + 34271 0.67 0.895659
Target:  5'- gGCCcguaGACCUCAcggCGGCCgGCGggGAc -3'
miRNA:   3'- -UGGuug-CUGGAGUa--GUCGG-CGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 34447 0.66 0.950277
Target:  5'- cACCGaagACGGCCUCG-CGGCCuG-GGUGGc -3'
miRNA:   3'- -UGGU---UGCUGGAGUaGUCGG-CgCUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.