miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 5' -54.2 NC_005261.1 + 120574 0.68 0.867037
Target:  5'- cGCCAcGCGGcgcgccauCCUCAUCGGCCucGCGAUc- -3'
miRNA:   3'- -UGGU-UGCU--------GGAGUAGUCGG--CGCUAcu -5'
23577 5' -54.2 NC_005261.1 + 118396 0.71 0.702088
Target:  5'- cGCUGGCGGCCgcgggcgCcgCAGCCGCGcUGGc -3'
miRNA:   3'- -UGGUUGCUGGa------GuaGUCGGCGCuACU- -5'
23577 5' -54.2 NC_005261.1 + 118225 0.7 0.79973
Target:  5'- cGCUGACGGCCg---CGGCCGCGGc-- -3'
miRNA:   3'- -UGGUUGCUGGaguaGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 118057 0.66 0.945923
Target:  5'- cGCUGGCGGCCgcggCAgcggccgCAGCCGCGc--- -3'
miRNA:   3'- -UGGUUGCUGGa---GUa------GUCGGCGCuacu -5'
23577 5' -54.2 NC_005261.1 + 117270 0.67 0.908554
Target:  5'- cGCCGcgguccACGACCUCGUaaacCAGCCG-GAgGAg -3'
miRNA:   3'- -UGGU------UGCUGGAGUA----GUCGGCgCUaCU- -5'
23577 5' -54.2 NC_005261.1 + 117036 0.66 0.950277
Target:  5'- gGCCAGCGuCCg---CGGCCGCGc--- -3'
miRNA:   3'- -UGGUUGCuGGaguaGUCGGCGCuacu -5'
23577 5' -54.2 NC_005261.1 + 116764 0.66 0.941327
Target:  5'- uGCgAACG-CCUUucugguauUCAGCCGCGAg-- -3'
miRNA:   3'- -UGgUUGCuGGAGu-------AGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 115533 0.67 0.895659
Target:  5'- cUCGACGGCCUCGUC-GCCGgGc--- -3'
miRNA:   3'- uGGUUGCUGGAGUAGuCGGCgCuacu -5'
23577 5' -54.2 NC_005261.1 + 114486 1.09 0.003817
Target:  5'- aACCAACGACCUCAUCAGCCGCGAUGAg -3'
miRNA:   3'- -UGGUUGCUGGAGUAGUCGGCGCUACU- -5'
23577 5' -54.2 NC_005261.1 + 114286 0.7 0.790518
Target:  5'- uGCCGACGACCcCGaaacCcGCCGCGAggUGAg -3'
miRNA:   3'- -UGGUUGCUGGaGUa---GuCGGCGCU--ACU- -5'
23577 5' -54.2 NC_005261.1 + 114097 0.69 0.84325
Target:  5'- uACCGcuuucuguucGCGuuCCUC-UCGGCCGcCGAUGAc -3'
miRNA:   3'- -UGGU----------UGCu-GGAGuAGUCGGC-GCUACU- -5'
23577 5' -54.2 NC_005261.1 + 114056 0.66 0.945923
Target:  5'- cGCCGACGACCccccggaAGCCuGCGAcGAu -3'
miRNA:   3'- -UGGUUGCUGGaguag--UCGG-CGCUaCU- -5'
23577 5' -54.2 NC_005261.1 + 113877 0.66 0.945475
Target:  5'- cGCCGACGAuCCcCGggAGCCGCauugcgaGGUGAg -3'
miRNA:   3'- -UGGUUGCU-GGaGUagUCGGCG-------CUACU- -5'
23577 5' -54.2 NC_005261.1 + 109390 0.73 0.629496
Target:  5'- gGCCAcgACGGCCgCcUCAGCCGCGGc-- -3'
miRNA:   3'- -UGGU--UGCUGGaGuAGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 107909 0.7 0.771659
Target:  5'- gGCC-GCGGCCUCGgccacgaguGCCGCGcgGAu -3'
miRNA:   3'- -UGGuUGCUGGAGUagu------CGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 107721 0.68 0.874536
Target:  5'- uGCCGcggcagGCGGCUgcgCcUCGGCCGCGggGGg -3'
miRNA:   3'- -UGGU------UGCUGGa--GuAGUCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 107129 0.67 0.908554
Target:  5'- cGCCGGCGACggCGcccaCGGCCGCGGccaUGGa -3'
miRNA:   3'- -UGGUUGCUGgaGUa---GUCGGCGCU---ACU- -5'
23577 5' -54.2 NC_005261.1 + 106528 0.67 0.908554
Target:  5'- cGCCAGCaccGCCUCcUCGGCgGCGGc-- -3'
miRNA:   3'- -UGGUUGc--UGGAGuAGUCGgCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 105710 0.69 0.834913
Target:  5'- cGCCAGCGACgUCu---GCCGCGGc-- -3'
miRNA:   3'- -UGGUUGCUGgAGuaguCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 105227 0.66 0.945923
Target:  5'- gGCC-GCGGCCg---CGGCCGUGAUc- -3'
miRNA:   3'- -UGGuUGCUGGaguaGUCGGCGCUAcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.