miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 5' -54.2 NC_005261.1 + 64468 0.71 0.722417
Target:  5'- gGCCAGCG-CCUCGUagaagCGGCCGUGGc-- -3'
miRNA:   3'- -UGGUUGCuGGAGUA-----GUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 35080 0.71 0.732466
Target:  5'- cGCCcccuCGcCCUCGg-AGCCGCGGUGAg -3'
miRNA:   3'- -UGGuu--GCuGGAGUagUCGGCGCUACU- -5'
23577 5' -54.2 NC_005261.1 + 53277 0.71 0.742424
Target:  5'- cCCGACG-CCUCggCGGCCGcCGAgGAg -3'
miRNA:   3'- uGGUUGCuGGAGuaGUCGGC-GCUaCU- -5'
23577 5' -54.2 NC_005261.1 + 77387 0.71 0.742424
Target:  5'- cCCGgcgcGCGACCUCG-CcGCCGcCGAUGAu -3'
miRNA:   3'- uGGU----UGCUGGAGUaGuCGGC-GCUACU- -5'
23577 5' -54.2 NC_005261.1 + 98138 0.71 0.752282
Target:  5'- cACCGGCGGCCgUCGgcggcaaGGCCGCGGg-- -3'
miRNA:   3'- -UGGUUGCUGG-AGUag-----UCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 59045 0.71 0.752282
Target:  5'- cGCCGcGCGAgCUCAgcgcgcgCGGCCGCGGaGAg -3'
miRNA:   3'- -UGGU-UGCUgGAGUa------GUCGGCGCUaCU- -5'
23577 5' -54.2 NC_005261.1 + 47496 0.71 0.752282
Target:  5'- cGCCAGCG-CCUCAggcgCGGCCcaGCGGUc- -3'
miRNA:   3'- -UGGUUGCuGGAGUa---GUCGG--CGCUAcu -5'
23577 5' -54.2 NC_005261.1 + 51101 0.71 0.752282
Target:  5'- cGCCGucGCGGCCUUugacgucgCGGCCGCuGUGAu -3'
miRNA:   3'- -UGGU--UGCUGGAGua------GUCGGCGcUACU- -5'
23577 5' -54.2 NC_005261.1 + 121092 0.71 0.752282
Target:  5'- cGCCAGCG-CCUCca-GGCCGUGcgGGu -3'
miRNA:   3'- -UGGUUGCuGGAGuagUCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 102290 0.7 0.771659
Target:  5'- cGCCAGCGGCCgcgggUcgUAGCCGCGc--- -3'
miRNA:   3'- -UGGUUGCUGGa----GuaGUCGGCGCuacu -5'
23577 5' -54.2 NC_005261.1 + 107909 0.7 0.771659
Target:  5'- gGCC-GCGGCCUCGgccacgaguGCCGCGcgGAu -3'
miRNA:   3'- -UGGuUGCUGGAGUagu------CGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 103211 0.7 0.771659
Target:  5'- cGCCAGCGACCgagaCGcCGGCCGCa---- -3'
miRNA:   3'- -UGGUUGCUGGa---GUaGUCGGCGcuacu -5'
23577 5' -54.2 NC_005261.1 + 99659 0.7 0.780214
Target:  5'- cGCCAGCacgcuGACCgUCGUCAGCgCGCugcccggGAUGAg -3'
miRNA:   3'- -UGGUUG-----CUGG-AGUAGUCG-GCG-------CUACU- -5'
23577 5' -54.2 NC_005261.1 + 43412 0.7 0.781157
Target:  5'- cGCCGgggGCGGCCUCcgCcGCCgGCGggGAg -3'
miRNA:   3'- -UGGU---UGCUGGAGuaGuCGG-CGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 122934 0.7 0.781157
Target:  5'- uCCGACGACC-CGgaGGCCGCGAc-- -3'
miRNA:   3'- uGGUUGCUGGaGUagUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 9769 0.7 0.790518
Target:  5'- uGCCGACGACCcCGaaacCcGCCGCGAggUGAg -3'
miRNA:   3'- -UGGUUGCUGGaGUa---GuCGGCGCU--ACU- -5'
23577 5' -54.2 NC_005261.1 + 114286 0.7 0.790518
Target:  5'- uGCCGACGACCcCGaaacCcGCCGCGAggUGAg -3'
miRNA:   3'- -UGGUUGCUGGaGUa---GuCGGCGCU--ACU- -5'
23577 5' -54.2 NC_005261.1 + 50850 0.7 0.790518
Target:  5'- -aCGACGGCCgaggaCAUCuGCCGCGcgGUGGg -3'
miRNA:   3'- ugGUUGCUGGa----GUAGuCGGCGC--UACU- -5'
23577 5' -54.2 NC_005261.1 + 98851 0.7 0.79973
Target:  5'- cGCCAGggcCGcCCUCccCGGCCGcCGAUGAg -3'
miRNA:   3'- -UGGUU---GCuGGAGuaGUCGGC-GCUACU- -5'
23577 5' -54.2 NC_005261.1 + 118225 0.7 0.79973
Target:  5'- cGCUGACGGCCg---CGGCCGCGGc-- -3'
miRNA:   3'- -UGGUUGCUGGaguaGUCGGCGCUacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.