miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 5' -54.2 NC_005261.1 + 135983 0.72 0.66077
Target:  5'- cGCCGGCGGCCUgAgUGGCCGcCGGUGc -3'
miRNA:   3'- -UGGUUGCUGGAgUaGUCGGC-GCUACu -5'
23577 5' -54.2 NC_005261.1 + 134780 0.68 0.873796
Target:  5'- gACCAcgagagcGCGAcCCUCAgcUCGGCCaGCGA-GAg -3'
miRNA:   3'- -UGGU-------UGCU-GGAGU--AGUCGG-CGCUaCU- -5'
23577 5' -54.2 NC_005261.1 + 134706 0.66 0.945923
Target:  5'- cGCCGagGCGGCCgccgCGcuggagCGGCCGCGcUGGc -3'
miRNA:   3'- -UGGU--UGCUGGa---GUa-----GUCGGCGCuACU- -5'
23577 5' -54.2 NC_005261.1 + 134560 0.66 0.941327
Target:  5'- gGCC-GCGGCCUgc-CGGCCGCGGc-- -3'
miRNA:   3'- -UGGuUGCUGGAguaGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 134355 0.67 0.92047
Target:  5'- cGCCGAgcugcgcgcCGugCUCGcCGGCCGCGcgGc -3'
miRNA:   3'- -UGGUU---------GCugGAGUaGUCGGCGCuaCu -5'
23577 5' -54.2 NC_005261.1 + 133284 0.66 0.936484
Target:  5'- cGCCGGCGcccGCCUCGU-GGCCGCcaagGAc -3'
miRNA:   3'- -UGGUUGC---UGGAGUAgUCGGCGcua-CU- -5'
23577 5' -54.2 NC_005261.1 + 133007 0.75 0.496766
Target:  5'- gACCuguACGACCUCAUCgAGuCCGCGGa-- -3'
miRNA:   3'- -UGGu--UGCUGGAGUAG-UC-GGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 132715 0.73 0.59824
Target:  5'- aGCCGGCGGCCUCGcCGccguGCCGCGGc-- -3'
miRNA:   3'- -UGGUUGCUGGAGUaGU----CGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 132647 0.69 0.834913
Target:  5'- gGCgCGGCGGCC-CuagCGGCCGCGuGUGGg -3'
miRNA:   3'- -UG-GUUGCUGGaGua-GUCGGCGC-UACU- -5'
23577 5' -54.2 NC_005261.1 + 131984 0.69 0.851388
Target:  5'- gGCCAccaGGCCUUcgCAGUCGCGGa-- -3'
miRNA:   3'- -UGGUug-CUGGAGuaGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 131054 0.67 0.895659
Target:  5'- cGCCAccuACGACCUgCA--GGCCGUGcgGGa -3'
miRNA:   3'- -UGGU---UGCUGGA-GUagUCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 128899 0.67 0.895659
Target:  5'- cCCggUGGgCUCGUCGGCgGCGGg-- -3'
miRNA:   3'- uGGuuGCUgGAGUAGUCGgCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 123313 0.69 0.834913
Target:  5'- cACgAGCGGCCcaagCAcCGGCCGCGAa-- -3'
miRNA:   3'- -UGgUUGCUGGa---GUaGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 122934 0.7 0.781157
Target:  5'- uCCGACGACC-CGgaGGCCGCGAc-- -3'
miRNA:   3'- uGGUUGCUGGaGUagUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 122588 0.66 0.941327
Target:  5'- cGCCGcaGCGGCCUUGUacGCCGCGuUGu -3'
miRNA:   3'- -UGGU--UGCUGGAGUAguCGGCGCuACu -5'
23577 5' -54.2 NC_005261.1 + 122463 0.68 0.859319
Target:  5'- cGCCAGCGGCCUUguguAUC-GCgGCGAg-- -3'
miRNA:   3'- -UGGUUGCUGGAG----UAGuCGgCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 122373 0.71 0.702088
Target:  5'- aGCCAuugccGCGACCUCGUCcucuagcgcGCuCGCGAUGc -3'
miRNA:   3'- -UGGU-----UGCUGGAGUAGu--------CG-GCGCUACu -5'
23577 5' -54.2 NC_005261.1 + 122088 0.69 0.815908
Target:  5'- uGCCGGuCGGCaUCGgggucggcaucgCGGCCGCGGUGAu -3'
miRNA:   3'- -UGGUU-GCUGgAGUa-----------GUCGGCGCUACU- -5'
23577 5' -54.2 NC_005261.1 + 121092 0.71 0.752282
Target:  5'- cGCCAGCG-CCUCca-GGCCGUGcgGGu -3'
miRNA:   3'- -UGGUUGCuGGAGuagUCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 120602 0.68 0.881809
Target:  5'- cGCCuGCGGCCUCGgc-GCCGUGGg-- -3'
miRNA:   3'- -UGGuUGCUGGAGUaguCGGCGCUacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.