miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 5' -54.2 NC_005261.1 + 1344 0.69 0.826384
Target:  5'- cGCCAguAC-ACUUCAUCGGCCGCGc--- -3'
miRNA:   3'- -UGGU--UGcUGGAGUAGUCGGCGCuacu -5'
23577 5' -54.2 NC_005261.1 + 1978 0.66 0.945923
Target:  5'- cCCGACGGCCgggcCAUCGGCgGCc---- -3'
miRNA:   3'- uGGUUGCUGGa---GUAGUCGgCGcuacu -5'
23577 5' -54.2 NC_005261.1 + 4823 0.67 0.908554
Target:  5'- cACCAGCGagcggGCCUUGUUuugGGCCGCGcgcccGUGGg -3'
miRNA:   3'- -UGGUUGC-----UGGAGUAG---UCGGCGC-----UACU- -5'
23577 5' -54.2 NC_005261.1 + 4873 0.73 0.629496
Target:  5'- gGCCAcgACGGCCgCcUCAGCCGCGGc-- -3'
miRNA:   3'- -UGGU--UGCUGGaGuAGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 5018 0.69 0.84325
Target:  5'- cCCAGCucGGCCUCGaCGGCgucgGCGAUGAa -3'
miRNA:   3'- uGGUUG--CUGGAGUaGUCGg---CGCUACU- -5'
23577 5' -54.2 NC_005261.1 + 5831 0.67 0.92047
Target:  5'- gGCCAggcgucggcgGCGGCCUCGgggaaCAgcGCCGCGAg-- -3'
miRNA:   3'- -UGGU----------UGCUGGAGUa----GU--CGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 6157 0.66 0.941327
Target:  5'- -gCAGCGGCgaCggCGGCCGCGAc-- -3'
miRNA:   3'- ugGUUGCUGgaGuaGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 9360 0.66 0.945475
Target:  5'- cGCCGACGAuCCcCGggAGCCGCauugcgaGGUGAg -3'
miRNA:   3'- -UGGUUGCU-GGaGUagUCGGCG-------CUACU- -5'
23577 5' -54.2 NC_005261.1 + 9402 0.66 0.936484
Target:  5'- gGCCAGCcGCgCgagCGUCAGCCGCa---- -3'
miRNA:   3'- -UGGUUGcUG-Ga--GUAGUCGGCGcuacu -5'
23577 5' -54.2 NC_005261.1 + 9539 0.66 0.945923
Target:  5'- cGCCGACGACCccccggaAGCCuGCGAcGAu -3'
miRNA:   3'- -UGGUUGCUGGaguag--UCGG-CGCUaCU- -5'
23577 5' -54.2 NC_005261.1 + 9769 0.7 0.790518
Target:  5'- uGCCGACGACCcCGaaacCcGCCGCGAggUGAg -3'
miRNA:   3'- -UGGUUGCUGGaGUa---GuCGGCGCU--ACU- -5'
23577 5' -54.2 NC_005261.1 + 11015 0.67 0.895659
Target:  5'- cUCGACGGCCUCGUC-GCCGgGc--- -3'
miRNA:   3'- uGGUUGCUGGAGUAGuCGGCgCuacu -5'
23577 5' -54.2 NC_005261.1 + 15158 0.68 0.867037
Target:  5'- gGCCGGCcgccucucggGGCCUCAUCgAGCgGCGGgcaGAg -3'
miRNA:   3'- -UGGUUG----------CUGGAGUAG-UCGgCGCUa--CU- -5'
23577 5' -54.2 NC_005261.1 + 15754 0.66 0.936484
Target:  5'- gGCCGACcGCCUC----GCCGCGAUa- -3'
miRNA:   3'- -UGGUUGcUGGAGuaguCGGCGCUAcu -5'
23577 5' -54.2 NC_005261.1 + 16113 0.72 0.66077
Target:  5'- gGCCAcgcacGCGAUCaCcgCGGCCGCGAUGc -3'
miRNA:   3'- -UGGU-----UGCUGGaGuaGUCGGCGCUACu -5'
23577 5' -54.2 NC_005261.1 + 17962 0.68 0.881809
Target:  5'- aGCCGggcgggcgguagACGGCCggCGUggCAGCCGCGgcGAa -3'
miRNA:   3'- -UGGU------------UGCUGGa-GUA--GUCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 18241 0.69 0.808784
Target:  5'- aGCCGGCGcCCUCcagcGUCGGCCGgGGc-- -3'
miRNA:   3'- -UGGUUGCuGGAG----UAGUCGGCgCUacu -5'
23577 5' -54.2 NC_005261.1 + 18694 0.69 0.834913
Target:  5'- -gCGGCGggGCCUUGcUCGGCCGCGggGAc -3'
miRNA:   3'- ugGUUGC--UGGAGU-AGUCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 19797 0.66 0.936484
Target:  5'- cGCCGcgGCGGCgUCcgCGGCgGCGAc-- -3'
miRNA:   3'- -UGGU--UGCUGgAGuaGUCGgCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 19851 0.68 0.867037
Target:  5'- cGCCAGCG-CCUCG--GGCCGCGc--- -3'
miRNA:   3'- -UGGUUGCuGGAGUagUCGGCGCuacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.