miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23578 3' -49.1 NC_005261.1 + 33329 0.68 0.990852
Target:  5'- ------gGCCCuGGAGGGCGUCCggGCg -3'
miRNA:   3'- cgagaagUGGGuUUUCCUGUAGGa-CG- -5'
23578 3' -49.1 NC_005261.1 + 33928 0.69 0.978096
Target:  5'- uCUCUugugUCGCCCAGcAGGAUGgcgccgCCUGUc -3'
miRNA:   3'- cGAGA----AGUGGGUUuUCCUGUa-----GGACG- -5'
23578 3' -49.1 NC_005261.1 + 36352 0.67 0.993115
Target:  5'- cGCggCUgggCGCCCugcgcgcGGACGUgCUGCa -3'
miRNA:   3'- -CGa-GAa--GUGGGuuuu---CCUGUAgGACG- -5'
23578 3' -49.1 NC_005261.1 + 37298 0.69 0.975532
Target:  5'- uGCUCgcggaUCGCCCcccgcacGAGGACgcgGUCCUGg -3'
miRNA:   3'- -CGAGa----AGUGGGuu-----UUCCUG---UAGGACg -5'
23578 3' -49.1 NC_005261.1 + 37426 0.67 0.996301
Target:  5'- gGCgcacgCGCCCuuccGGGACcugcugGUCCUGCg -3'
miRNA:   3'- -CGagaa-GUGGGuuu-UCCUG------UAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 37553 0.67 0.996301
Target:  5'- cGCUCccgccgcCGCCaccGGGGuGCGUCCUGCc -3'
miRNA:   3'- -CGAGaa-----GUGGguuUUCC-UGUAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 38795 0.69 0.985342
Target:  5'- cGCUCUUcCGCCCGAcGGGGAgCAgcgugacguucacgcUCgUGCg -3'
miRNA:   3'- -CGAGAA-GUGGGUU-UUCCU-GU---------------AGgACG- -5'
23578 3' -49.1 NC_005261.1 + 42968 0.7 0.959367
Target:  5'- gGCUCUUCA------AGGAgAUCCUGCu -3'
miRNA:   3'- -CGAGAAGUggguuuUCCUgUAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 46487 0.67 0.994907
Target:  5'- aGCUCggCGCCCuccgcGGGGCGcagCCcgGCg -3'
miRNA:   3'- -CGAGaaGUGGGuuu--UCCUGUa--GGa-CG- -5'
23578 3' -49.1 NC_005261.1 + 51343 0.68 0.989519
Target:  5'- gGCUCUUCugCaccgcuGGGCuGUCCgGCg -3'
miRNA:   3'- -CGAGAAGugGguuuu-CCUG-UAGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 52927 0.69 0.978096
Target:  5'- aGCUCUUC-CCCAAcGGGAag-CC-GCc -3'
miRNA:   3'- -CGAGAAGuGGGUUuUCCUguaGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 53805 0.67 0.99558
Target:  5'- gGCUggUCGCCgGAGGGcgcggccGACAUgCUGCg -3'
miRNA:   3'- -CGAgaAGUGGgUUUUC-------CUGUAgGACG- -5'
23578 3' -49.1 NC_005261.1 + 54973 0.7 0.963071
Target:  5'- aGCUCUgcgUCACCgCGAAccAGGGCgaGUCCguggGCc -3'
miRNA:   3'- -CGAGA---AGUGG-GUUU--UCCUG--UAGGa---CG- -5'
23578 3' -49.1 NC_005261.1 + 55630 0.7 0.969758
Target:  5'- gGCUCacgCGCCCGGaccagcgcaacGAGGACG-CgCUGCg -3'
miRNA:   3'- -CGAGaa-GUGGGUU-----------UUCCUGUaG-GACG- -5'
23578 3' -49.1 NC_005261.1 + 56392 0.67 0.994066
Target:  5'- aGCUCgcggggGCCCu---GGGCGcCCUGCg -3'
miRNA:   3'- -CGAGaag---UGGGuuuuCCUGUaGGACG- -5'
23578 3' -49.1 NC_005261.1 + 56881 0.68 0.992047
Target:  5'- cGCUCg-CACCUucAAGGGCAUCaagaucgGCu -3'
miRNA:   3'- -CGAGaaGUGGGuuUUCCUGUAGga-----CG- -5'
23578 3' -49.1 NC_005261.1 + 61441 0.68 0.988039
Target:  5'- cGCUCgcgcggCGCCagcgcGGGGGCGUCC-GCg -3'
miRNA:   3'- -CGAGaa----GUGGguu--UUCCUGUAGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 64935 0.7 0.959367
Target:  5'- uGCUCgcCGCCCA--GGGGCG-CgUGCg -3'
miRNA:   3'- -CGAGaaGUGGGUuuUCCUGUaGgACG- -5'
23578 3' -49.1 NC_005261.1 + 65345 0.67 0.994907
Target:  5'- aGCUCUaC-CCCGGcggcGGGGCGgaCCUGCc -3'
miRNA:   3'- -CGAGAaGuGGGUUu---UCCUGUa-GGACG- -5'
23578 3' -49.1 NC_005261.1 + 66923 0.66 0.997365
Target:  5'- ------uGCCCAGGAGGGCGUCgaagGCg -3'
miRNA:   3'- cgagaagUGGGUUUUCCUGUAGga--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.