miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23578 3' -49.1 NC_005261.1 + 2008 0.66 0.997793
Target:  5'- cGCUCUagUC-CCCGGAuGG-CGUUUUGCc -3'
miRNA:   3'- -CGAGA--AGuGGGUUUuCCuGUAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 3676 0.66 0.997365
Target:  5'- cGCggCgcCGCCCAgcAAGGGGCGgucacgUCUGCg -3'
miRNA:   3'- -CGa-GaaGUGGGU--UUUCCUGUa-----GGACG- -5'
23578 3' -49.1 NC_005261.1 + 5436 0.67 0.994907
Target:  5'- gGCUCaUgGCCUcggcGAAGGGGCGcUCCaGCa -3'
miRNA:   3'- -CGAGaAgUGGG----UUUUCCUGU-AGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 5633 0.66 0.997365
Target:  5'- gGCggcUCGCCgGGccGGGCGUCCgcggGCg -3'
miRNA:   3'- -CGagaAGUGGgUUuuCCUGUAGGa---CG- -5'
23578 3' -49.1 NC_005261.1 + 6051 0.71 0.942029
Target:  5'- cUUCUUCuCCCAAAGGGGCcccucGUCCcgacgGCg -3'
miRNA:   3'- cGAGAAGuGGGUUUUCCUG-----UAGGa----CG- -5'
23578 3' -49.1 NC_005261.1 + 6635 0.67 0.995921
Target:  5'- aGCUCaUCugCCuauugccgcccccuGAcuGGGGCuUCCUGCu -3'
miRNA:   3'- -CGAGaAGugGGu-------------UU--UCCUGuAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 10007 0.71 0.946751
Target:  5'- cGCUUgcCACCCGAccGGGCGggCCUcGCg -3'
miRNA:   3'- -CGAGaaGUGGGUUuuCCUGUa-GGA-CG- -5'
23578 3' -49.1 NC_005261.1 + 10466 0.68 0.986403
Target:  5'- aGCUC-UCGCCCGAGcAGGcCGgccCgCUGCa -3'
miRNA:   3'- -CGAGaAGUGGGUUU-UCCuGUa--G-GACG- -5'
23578 3' -49.1 NC_005261.1 + 10537 0.66 0.997793
Target:  5'- cGCUCgcugUCGCCCcc--GGcGCG-CCUGCc -3'
miRNA:   3'- -CGAGa---AGUGGGuuuuCC-UGUaGGACG- -5'
23578 3' -49.1 NC_005261.1 + 11720 0.68 0.986403
Target:  5'- cGCggg-CGCCCAGGcaGACcgCCUGCg -3'
miRNA:   3'- -CGagaaGUGGGUUUucCUGuaGGACG- -5'
23578 3' -49.1 NC_005261.1 + 14125 0.67 0.996051
Target:  5'- gGCUCgggcggugggcagUCGCUCGcGAGGACGcUCCaGCc -3'
miRNA:   3'- -CGAGa------------AGUGGGUuUUCCUGU-AGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 16036 0.67 0.994066
Target:  5'- aGCuUCUUCGCCUucuuGGGCAgcgggCCcGCg -3'
miRNA:   3'- -CG-AGAAGUGGGuuuuCCUGUa----GGaCG- -5'
23578 3' -49.1 NC_005261.1 + 16276 0.7 0.969758
Target:  5'- gGCUUcggcUCGCCCGGGGGGGCG-CCgucggGCc -3'
miRNA:   3'- -CGAGa---AGUGGGUUUUCCUGUaGGa----CG- -5'
23578 3' -49.1 NC_005261.1 + 19926 0.68 0.992047
Target:  5'- cGCUC-UCGCCCucgcuaGCGUCCUGg -3'
miRNA:   3'- -CGAGaAGUGGGuuuuccUGUAGGACg -5'
23578 3' -49.1 NC_005261.1 + 21236 0.66 0.997365
Target:  5'- cGCUCgcgggcggcUCGCCagugaucaGGAAGGcuACGUUCUGCa -3'
miRNA:   3'- -CGAGa--------AGUGGg-------UUUUCC--UGUAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 21248 0.65 0.998417
Target:  5'- gGCUUUUCagggcguGCCgCAAcgagcacGAGGACggCCUGUa -3'
miRNA:   3'- -CGAGAAG-------UGG-GUU-------UUCCUGuaGGACG- -5'
23578 3' -49.1 NC_005261.1 + 24006 0.67 0.995216
Target:  5'- cGCUgUaCACCCGcgagugcaccaccucGAuGGAC-UCCUGCu -3'
miRNA:   3'- -CGAgAaGUGGGU---------------UUuCCUGuAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 25271 0.69 0.980456
Target:  5'- uUUUUUCGCCgCGAGGGGGCGcggUCUGUg -3'
miRNA:   3'- cGAGAAGUGG-GUUUUCCUGUa--GGACG- -5'
23578 3' -49.1 NC_005261.1 + 31236 0.66 0.998161
Target:  5'- cGCUCUUC-CCCGAGcccuGGCGcCCgGCg -3'
miRNA:   3'- -CGAGAAGuGGGUUUuc--CUGUaGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 31599 0.67 0.99565
Target:  5'- cGCUCggCGCgC---AGGGCGUgCUGCu -3'
miRNA:   3'- -CGAGaaGUGgGuuuUCCUGUAgGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.