miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23578 3' -49.1 NC_005261.1 + 5436 0.67 0.994907
Target:  5'- gGCUCaUgGCCUcggcGAAGGGGCGcUCCaGCa -3'
miRNA:   3'- -CGAGaAgUGGG----UUUUCCUGU-AGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 38795 0.69 0.985342
Target:  5'- cGCUCUUcCGCCCGAcGGGGAgCAgcgugacguucacgcUCgUGCg -3'
miRNA:   3'- -CGAGAA-GUGGGUU-UUCCU-GU---------------AGgACG- -5'
23578 3' -49.1 NC_005261.1 + 114983 0.68 0.986403
Target:  5'- aGCUC-UCGCCCGAGcAGGcCGgccCgCUGCa -3'
miRNA:   3'- -CGAGaAGUGGGUUU-UCCuGUa--G-GACG- -5'
23578 3' -49.1 NC_005261.1 + 11720 0.68 0.986403
Target:  5'- cGCggg-CGCCCAGGcaGACcgCCUGCg -3'
miRNA:   3'- -CGagaaGUGGGUUUucCUGuaGGACG- -5'
23578 3' -49.1 NC_005261.1 + 61441 0.68 0.988039
Target:  5'- cGCUCgcgcggCGCCagcgcGGGGGCGUCC-GCg -3'
miRNA:   3'- -CGAGaa----GUGGguu--UUCCUGUAGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 33329 0.68 0.990852
Target:  5'- ------gGCCCuGGAGGGCGUCCggGCg -3'
miRNA:   3'- cgagaagUGGGuUUUCCUGUAGGa-CG- -5'
23578 3' -49.1 NC_005261.1 + 96554 0.68 0.992047
Target:  5'- aCUCUUCACaCCGcGAGGugAgcgCCUa- -3'
miRNA:   3'- cGAGAAGUG-GGUuUUCCugUa--GGAcg -5'
23578 3' -49.1 NC_005261.1 + 36352 0.67 0.993115
Target:  5'- cGCggCUgggCGCCCugcgcgcGGACGUgCUGCa -3'
miRNA:   3'- -CGa-GAa--GUGGGuuuu---CCUGUAgGACG- -5'
23578 3' -49.1 NC_005261.1 + 74355 0.67 0.993509
Target:  5'- uGCUCUUCGCCgAGAAGGcCucggagucguacuuuGUCggGCa -3'
miRNA:   3'- -CGAGAAGUGGgUUUUCCuG---------------UAGgaCG- -5'
23578 3' -49.1 NC_005261.1 + 129788 0.69 0.980456
Target:  5'- uUUUUUCGCCgCGAGGGGGCGcggUCUGUg -3'
miRNA:   3'- cGAGAAGUGG-GUUUUCCUGUa--GGACG- -5'
23578 3' -49.1 NC_005261.1 + 52927 0.69 0.978096
Target:  5'- aGCUCUUC-CCCAAcGGGAag-CC-GCc -3'
miRNA:   3'- -CGAGAAGuGGGUUuUCCUguaGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 55630 0.7 0.969758
Target:  5'- gGCUCacgCGCCCGGaccagcgcaacGAGGACG-CgCUGCg -3'
miRNA:   3'- -CGAGaa-GUGGGUU-----------UUCCUGUaG-GACG- -5'
23578 3' -49.1 NC_005261.1 + 74052 0.72 0.908122
Target:  5'- cGCUUUUCGCCUgcccGGACcaCCUGCa -3'
miRNA:   3'- -CGAGAAGUGGGuuuuCCUGuaGGACG- -5'
23578 3' -49.1 NC_005261.1 + 98380 0.72 0.914439
Target:  5'- uGC-CUgggCGCCCGGcGGGACAUCCa-- -3'
miRNA:   3'- -CGaGAa--GUGGGUUuUCCUGUAGGacg -5'
23578 3' -49.1 NC_005261.1 + 94165 0.72 0.931792
Target:  5'- -----aCGCCCGGAAGG-CGUCCUGg -3'
miRNA:   3'- cgagaaGUGGGUUUUCCuGUAGGACg -5'
23578 3' -49.1 NC_005261.1 + 110569 0.71 0.942029
Target:  5'- cUUCUUCuCCCAAAGGGGCcccucGUCCcgacgGCg -3'
miRNA:   3'- cGAGAAGuGGGUUUUCCUG-----UAGGa----CG- -5'
23578 3' -49.1 NC_005261.1 + 78333 0.71 0.942029
Target:  5'- uGCUCUUCGCCUAc---GACGagCUGCu -3'
miRNA:   3'- -CGAGAAGUGGGUuuucCUGUagGACG- -5'
23578 3' -49.1 NC_005261.1 + 114525 0.71 0.946751
Target:  5'- cGCUUgcCACCCGAccGGGCGggCCUcGCg -3'
miRNA:   3'- -CGAGaaGUGGGUUuuCCUGUa-GGA-CG- -5'
23578 3' -49.1 NC_005261.1 + 89467 0.71 0.951212
Target:  5'- aGCUCgucgggcCGCCCGGGGGGcgcgacuacgcGCAgugCCUGCu -3'
miRNA:   3'- -CGAGaa-----GUGGGUUUUCC-----------UGUa--GGACG- -5'
23578 3' -49.1 NC_005261.1 + 54973 0.7 0.963071
Target:  5'- aGCUCUgcgUCACCgCGAAccAGGGCgaGUCCguggGCc -3'
miRNA:   3'- -CGAGA---AGUGG-GUUU--UCCUG--UAGGa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.