miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23578 3' -49.1 NC_005261.1 + 114167 1.16 0.004161
Target:  5'- aGCUCUUCACCCAAAAGGACAUCCUGCa -3'
miRNA:   3'- -CGAGAAGUGGGUUUUCCUGUAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 82517 0.74 0.831231
Target:  5'- cCUCUUCGCCCGAGucGGcccCAUCCUcGCc -3'
miRNA:   3'- cGAGAAGUGGGUUUu-CCu--GUAGGA-CG- -5'
23578 3' -49.1 NC_005261.1 + 125396 0.74 0.856765
Target:  5'- aGUUCUUC-CCCGAcGAGGACucuUCCUucGCg -3'
miRNA:   3'- -CGAGAAGuGGGUU-UUCCUGu--AGGA--CG- -5'
23578 3' -49.1 NC_005261.1 + 76896 0.73 0.904206
Target:  5'- cGCUCUUCGCCCAcgucgcgcugugcguGcuGGGCcgCC-GCg -3'
miRNA:   3'- -CGAGAAGUGGGU---------------UuuCCUGuaGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 74052 0.72 0.908122
Target:  5'- cGCUUUUCGCCUgcccGGACcaCCUGCa -3'
miRNA:   3'- -CGAGAAGUGGGuuuuCCUGuaGGACG- -5'
23578 3' -49.1 NC_005261.1 + 98380 0.72 0.914439
Target:  5'- uGC-CUgggCGCCCGGcGGGACAUCCa-- -3'
miRNA:   3'- -CGaGAa--GUGGGUUuUCCUGUAGGacg -5'
23578 3' -49.1 NC_005261.1 + 94165 0.72 0.931792
Target:  5'- -----aCGCCCGGAAGG-CGUCCUGg -3'
miRNA:   3'- cgagaaGUGGGUUUUCCuGUAGGACg -5'
23578 3' -49.1 NC_005261.1 + 78333 0.71 0.942029
Target:  5'- uGCUCUUCGCCUAc---GACGagCUGCu -3'
miRNA:   3'- -CGAGAAGUGGGUuuucCUGUagGACG- -5'
23578 3' -49.1 NC_005261.1 + 110569 0.71 0.942029
Target:  5'- cUUCUUCuCCCAAAGGGGCcccucGUCCcgacgGCg -3'
miRNA:   3'- cGAGAAGuGGGUUUUCCUG-----UAGGa----CG- -5'
23578 3' -49.1 NC_005261.1 + 6051 0.71 0.942029
Target:  5'- cUUCUUCuCCCAAAGGGGCcccucGUCCcgacgGCg -3'
miRNA:   3'- cGAGAAGuGGGUUUUCCUG-----UAGGa----CG- -5'
23578 3' -49.1 NC_005261.1 + 114525 0.71 0.946751
Target:  5'- cGCUUgcCACCCGAccGGGCGggCCUcGCg -3'
miRNA:   3'- -CGAGaaGUGGGUUuuCCUGUa-GGA-CG- -5'
23578 3' -49.1 NC_005261.1 + 10007 0.71 0.946751
Target:  5'- cGCUUgcCACCCGAccGGGCGggCCUcGCg -3'
miRNA:   3'- -CGAGaaGUGGGUUuuCCUGUa-GGA-CG- -5'
23578 3' -49.1 NC_005261.1 + 85985 0.71 0.946751
Target:  5'- cGCUCgagcugCGCcgCCGAcGGGGCGUCgUGCg -3'
miRNA:   3'- -CGAGaa----GUG--GGUUuUCCUGUAGgACG- -5'
23578 3' -49.1 NC_005261.1 + 89467 0.71 0.951212
Target:  5'- aGCUCgucgggcCGCCCGGGGGGcgcgacuacgcGCAgugCCUGCu -3'
miRNA:   3'- -CGAGaa-----GUGGGUUUUCC-----------UGUa--GGACG- -5'
23578 3' -49.1 NC_005261.1 + 64935 0.7 0.959367
Target:  5'- uGCUCgcCGCCCA--GGGGCG-CgUGCg -3'
miRNA:   3'- -CGAGaaGUGGGUuuUCCUGUaGgACG- -5'
23578 3' -49.1 NC_005261.1 + 42968 0.7 0.959367
Target:  5'- gGCUCUUCA------AGGAgAUCCUGCu -3'
miRNA:   3'- -CGAGAAGUggguuuUCCUgUAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 54973 0.7 0.963071
Target:  5'- aGCUCUgcgUCACCgCGAAccAGGGCgaGUCCguggGCc -3'
miRNA:   3'- -CGAGA---AGUGG-GUUU--UCCUG--UAGGa---CG- -5'
23578 3' -49.1 NC_005261.1 + 16276 0.7 0.969758
Target:  5'- gGCUUcggcUCGCCCGGGGGGGCG-CCgucggGCc -3'
miRNA:   3'- -CGAGa---AGUGGGUUUUCCUGUaGGa----CG- -5'
23578 3' -49.1 NC_005261.1 + 55630 0.7 0.969758
Target:  5'- gGCUCacgCGCCCGGaccagcgcaacGAGGACG-CgCUGCg -3'
miRNA:   3'- -CGAGaa-GUGGGUU-----------UUCCUGUaG-GACG- -5'
23578 3' -49.1 NC_005261.1 + 82894 0.7 0.972755
Target:  5'- cCUCgccgCGCgCCGAcGAGGACAUCCagaacUGCa -3'
miRNA:   3'- cGAGaa--GUG-GGUU-UUCCUGUAGG-----ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.