miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 3' -56.1 NC_005261.1 + 114013 1.09 0.002697
Target:  5'- gCGAACCGCUGGCUGGAGACCGAGUUCc -3'
miRNA:   3'- -GCUUGGCGACCGACCUCUGGCUCAAG- -5'
23579 3' -56.1 NC_005261.1 + 110620 0.75 0.387329
Target:  5'- cCGAGCUGC-GGCUGGAGcCCGccggcguaaAGUUCg -3'
miRNA:   3'- -GCUUGGCGaCCGACCUCuGGC---------UCAAG- -5'
23579 3' -56.1 NC_005261.1 + 104372 0.75 0.404353
Target:  5'- aGAacaGCCGCcGGCcGGAGGCCGAGa-- -3'
miRNA:   3'- gCU---UGGCGaCCGaCCUCUGGCUCaag -5'
23579 3' -56.1 NC_005261.1 + 104704 0.73 0.535296
Target:  5'- cCGAAgaGC-GGCUGGAcGGCCGAGggCg -3'
miRNA:   3'- -GCUUggCGaCCGACCU-CUGGCUCaaG- -5'
23579 3' -56.1 NC_005261.1 + 66466 0.72 0.575586
Target:  5'- gCGGGCCGCgguccGGCUGGAGGUgGGGcUCg -3'
miRNA:   3'- -GCUUGGCGa----CCGACCUCUGgCUCaAG- -5'
23579 3' -56.1 NC_005261.1 + 4560 0.71 0.606251
Target:  5'- gCGAGCCGUUGGCgccGGAGG-CGAGc-- -3'
miRNA:   3'- -GCUUGGCGACCGa--CCUCUgGCUCaag -5'
23579 3' -56.1 NC_005261.1 + 7989 0.71 0.606251
Target:  5'- aCGAGCCGCUGGCgcGGcgccugagcGGGCCGAcGcUCu -3'
miRNA:   3'- -GCUUGGCGACCGa-CC---------UCUGGCU-CaAG- -5'
23579 3' -56.1 NC_005261.1 + 68079 0.71 0.616521
Target:  5'- uCGGucgcCCGCgggGGCggGGAGGCCGugaAGUUCg -3'
miRNA:   3'- -GCUu---GGCGa--CCGa-CCUCUGGC---UCAAG- -5'
23579 3' -56.1 NC_005261.1 + 124896 0.71 0.616521
Target:  5'- -cGACCGCUGGCcgcGcGAGugCGAGggCg -3'
miRNA:   3'- gcUUGGCGACCGa--C-CUCugGCUCaaG- -5'
23579 3' -56.1 NC_005261.1 + 74414 0.7 0.698428
Target:  5'- -cGGCCGCgGGCgGGAgGGCCGAGg-- -3'
miRNA:   3'- gcUUGGCGaCCGaCCU-CUGGCUCaag -5'
23579 3' -56.1 NC_005261.1 + 83902 0.7 0.698428
Target:  5'- gGGGCCGCcgGGCUcGGGACCGAcGgggUCc -3'
miRNA:   3'- gCUUGGCGa-CCGAcCUCUGGCU-Ca--AG- -5'
23579 3' -56.1 NC_005261.1 + 121207 0.7 0.708506
Target:  5'- gGGGCCGCgGGCcGGAGACUGcAGc-- -3'
miRNA:   3'- gCUUGGCGaCCGaCCUCUGGC-UCaag -5'
23579 3' -56.1 NC_005261.1 + 134375 0.69 0.71852
Target:  5'- gCGGcGCCGCUGGCgacgGcGAGAgCGGGaUCa -3'
miRNA:   3'- -GCU-UGGCGACCGa---C-CUCUgGCUCaAG- -5'
23579 3' -56.1 NC_005261.1 + 43466 0.69 0.71852
Target:  5'- cCGGGCgggUGCUGGC-GGAGugCGAGg-- -3'
miRNA:   3'- -GCUUG---GCGACCGaCCUCugGCUCaag -5'
23579 3' -56.1 NC_005261.1 + 35091 0.69 0.728459
Target:  5'- cCGGuACCGCgagGcGCUGGAGAacCCGGGcgCg -3'
miRNA:   3'- -GCU-UGGCGa--C-CGACCUCU--GGCUCaaG- -5'
23579 3' -56.1 NC_005261.1 + 121892 0.69 0.728459
Target:  5'- gGAGCCgGCgGGCaGGAGACCGGc--- -3'
miRNA:   3'- gCUUGG-CGaCCGaCCUCUGGCUcaag -5'
23579 3' -56.1 NC_005261.1 + 80855 0.69 0.738313
Target:  5'- cCGAGCUGCUGGCgGGcgucGGGCCGcgcgGGgaggUCg -3'
miRNA:   3'- -GCUUGGCGACCGaCC----UCUGGC----UCa---AG- -5'
23579 3' -56.1 NC_005261.1 + 60511 0.69 0.757733
Target:  5'- cCGGcGCCGCuUGGCUGGGGGgCGGcggUCg -3'
miRNA:   3'- -GCU-UGGCG-ACCGACCUCUgGCUca-AG- -5'
23579 3' -56.1 NC_005261.1 + 84858 0.68 0.767279
Target:  5'- gCGGGCCGCgUGGCcau-GACCGAGcgCa -3'
miRNA:   3'- -GCUUGGCG-ACCGaccuCUGGCUCaaG- -5'
23579 3' -56.1 NC_005261.1 + 78286 0.68 0.776704
Target:  5'- gCGcGCCGCgcugcGGCUGGAGAUggccgacggCGAGcUCg -3'
miRNA:   3'- -GCuUGGCGa----CCGACCUCUG---------GCUCaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.