Results 1 - 20 of 62 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23579 | 3' | -56.1 | NC_005261.1 | + | 213 | 0.67 | 0.838524 |
Target: 5'- cCGGGCCGCgccgGGCUGcGGGCCGc---- -3' miRNA: 3'- -GCUUGGCGa---CCGACcUCUGGCucaag -5' |
|||||||
23579 | 3' | -56.1 | NC_005261.1 | + | 356 | 0.68 | 0.795152 |
Target: 5'- gCGGcACCGCUGGCcccgGGAGcACCaGGggCg -3' miRNA: 3'- -GCU-UGGCGACCGa---CCUC-UGGcUCaaG- -5' |
|||||||
23579 | 3' | -56.1 | NC_005261.1 | + | 4452 | 0.67 | 0.821689 |
Target: 5'- gGAugcGCCGCacgagGGCgUGGAGGCaCGGGgcgUCg -3' miRNA: 3'- gCU---UGGCGa----CCG-ACCUCUG-GCUCa--AG- -5' |
|||||||
23579 | 3' | -56.1 | NC_005261.1 | + | 4560 | 0.71 | 0.606251 |
Target: 5'- gCGAGCCGUUGGCgccGGAGG-CGAGc-- -3' miRNA: 3'- -GCUUGGCGACCGa--CCUCUgGCUCaag -5' |
|||||||
23579 | 3' | -56.1 | NC_005261.1 | + | 7989 | 0.71 | 0.606251 |
Target: 5'- aCGAGCCGCUGGCgcGGcgccugagcGGGCCGAcGcUCu -3' miRNA: 3'- -GCUUGGCGACCGa-CC---------UCUGGCU-CaAG- -5' |
|||||||
23579 | 3' | -56.1 | NC_005261.1 | + | 9121 | 0.68 | 0.804158 |
Target: 5'- aGGGCCGCcgGGaCUGGGGG-CGGGUg- -3' miRNA: 3'- gCUUGGCGa-CC-GACCUCUgGCUCAag -5' |
|||||||
23579 | 3' | -56.1 | NC_005261.1 | + | 14509 | 0.66 | 0.891131 |
Target: 5'- gCGGACCGCgacgacGCUGcuGAuGGCCGAGUa- -3' miRNA: 3'- -GCUUGGCGac----CGAC--CU-CUGGCUCAag -5' |
|||||||
23579 | 3' | -56.1 | NC_005261.1 | + | 18699 | 0.66 | 0.869864 |
Target: 5'- gGGGCCuuGCUcGGCcgcGGGGACCGGGg-- -3' miRNA: 3'- gCUUGG--CGA-CCGa--CCUCUGGCUCaag -5' |
|||||||
23579 | 3' | -56.1 | NC_005261.1 | + | 19861 | 0.67 | 0.85772 |
Target: 5'- uCGGGCCGCgcgccccagcgcccGGCcGaGAGGCCGAGg-- -3' miRNA: 3'- -GCUUGGCGa-------------CCGaC-CUCUGGCUCaag -5' |
|||||||
23579 | 3' | -56.1 | NC_005261.1 | + | 22148 | 0.67 | 0.862337 |
Target: 5'- gCGGACCGC-GGCauccacGGGGACCGGc--- -3' miRNA: 3'- -GCUUGGCGaCCGa-----CCUCUGGCUcaag -5' |
|||||||
23579 | 3' | -56.1 | NC_005261.1 | + | 24116 | 0.66 | 0.869864 |
Target: 5'- cCGGGCCcgagGCggGGgUGGGGGCUGGGUg- -3' miRNA: 3'- -GCUUGG----CGa-CCgACCUCUGGCUCAag -5' |
|||||||
23579 | 3' | -56.1 | NC_005261.1 | + | 25602 | 0.66 | 0.891131 |
Target: 5'- cCGGGCCGUgcagccGGCUGaGGugCGAGgcgcggUCg -3' miRNA: 3'- -GCUUGGCGa-----CCGACcUCugGCUCa-----AG- -5' |
|||||||
23579 | 3' | -56.1 | NC_005261.1 | + | 32273 | 0.66 | 0.891131 |
Target: 5'- cCGAggcgccGCCGCUGGUgcUGGAGGCgGGc--- -3' miRNA: 3'- -GCU------UGGCGACCG--ACCUCUGgCUcaag -5' |
|||||||
23579 | 3' | -56.1 | NC_005261.1 | + | 32986 | 0.67 | 0.862337 |
Target: 5'- gGGACCGCgGaGgaGGGGGCCGAc--- -3' miRNA: 3'- gCUUGGCGaC-CgaCCUCUGGCUcaag -5' |
|||||||
23579 | 3' | -56.1 | NC_005261.1 | + | 33367 | 0.67 | 0.838524 |
Target: 5'- cCGGGCCGCgccgGGCUGcGGGCCGc---- -3' miRNA: 3'- -GCUUGGCGa---CCGACcUCUGGCucaag -5' |
|||||||
23579 | 3' | -56.1 | NC_005261.1 | + | 33522 | 0.68 | 0.795152 |
Target: 5'- gCGGcACCGCUGGCcccgGGAGcACCaGGggCg -3' miRNA: 3'- -GCU-UGGCGACCGa---CCUC-UGGcUCaaG- -5' |
|||||||
23579 | 3' | -56.1 | NC_005261.1 | + | 34087 | 0.68 | 0.801472 |
Target: 5'- --cGCCGCUGGCUGGAGGggcgcccaaccugcCCGcuGUg- -3' miRNA: 3'- gcuUGGCGACCGACCUCU--------------GGCu-CAag -5' |
|||||||
23579 | 3' | -56.1 | NC_005261.1 | + | 34684 | 0.66 | 0.877176 |
Target: 5'- gGGGCCcCUgGGCccGGGGGCCGAGg-- -3' miRNA: 3'- gCUUGGcGA-CCGa-CCUCUGGCUCaag -5' |
|||||||
23579 | 3' | -56.1 | NC_005261.1 | + | 35091 | 0.69 | 0.728459 |
Target: 5'- cCGGuACCGCgagGcGCUGGAGAacCCGGGcgCg -3' miRNA: 3'- -GCU-UGGCGa--C-CGACCUCU--GGCUCaaG- -5' |
|||||||
23579 | 3' | -56.1 | NC_005261.1 | + | 35944 | 0.68 | 0.785998 |
Target: 5'- aCGAcccgcgGCCGCUGGCgcGGcAGGCCGAc--- -3' miRNA: 3'- -GCU------UGGCGACCGa-CC-UCUGGCUcaag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home