Results 21 - 40 of 544 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 13970 | 0.66 | 0.687778 |
Target: 5'- -gGGCGCgCGGGcGGCGccGCGCGGCg- -3' miRNA: 3'- ugCUGCG-GUUC-CUGCacCGCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 46736 | 0.66 | 0.70747 |
Target: 5'- -aGGCGCgcGGGGCG-GGCGgCGGC-Cg -3' miRNA: 3'- ugCUGCGguUCCUGCaCCGC-GCCGaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 28226 | 0.66 | 0.696665 |
Target: 5'- gGCGGCGCCGGcGGGCGUGuccacgacgaccuGCcGgGGCg- -3' miRNA: 3'- -UGCUGCGGUU-CCUGCAC-------------CG-CgCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 30008 | 0.66 | 0.687778 |
Target: 5'- cACGuGCGCCAugcuGGAgCGcgccgugcUGGCGCaGCUCu -3' miRNA: 3'- -UGC-UGCGGUu---CCU-GC--------ACCGCGcCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 92284 | 0.66 | 0.687778 |
Target: 5'- aACGGCGCCcuGG-CGgcccucGcGCGCGGCg- -3' miRNA: 3'- -UGCUGCGGuuCCuGCa-----C-CGCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 91600 | 0.66 | 0.667908 |
Target: 5'- cACGuACGUCAAGGACGgcuucuggGGCGCcuucgGGgaCg -3' miRNA: 3'- -UGC-UGCGGUUCCUGCa-------CCGCG-----CCgaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 124166 | 0.66 | 0.667908 |
Target: 5'- gACGugGCCcuGGACGcGGCcugccuGCGgaccGCUCg -3' miRNA: 3'- -UGCugCGGuuCCUGCaCCG------CGC----CGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 78964 | 0.66 | 0.677861 |
Target: 5'- gGCGAcaCGCCGugcgacGCGUGGCGcCGGCg- -3' miRNA: 3'- -UGCU--GCGGUucc---UGCACCGC-GCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 44298 | 0.66 | 0.683816 |
Target: 5'- gGCGGCGCCcgcGGACGgcgcaagcccgcgGGCGCcGCg- -3' miRNA: 3'- -UGCUGCGGuu-CCUGCa------------CCGCGcCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 80569 | 0.66 | 0.687778 |
Target: 5'- cUGGCGCUcgcgcagucucGGGGGCGUGcucGgGCGGCUg -3' miRNA: 3'- uGCUGCGG-----------UUCCUGCAC---CgCGCCGAg -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 82609 | 0.66 | 0.677861 |
Target: 5'- gACGACGCgGAGGAC---GCGCuGCUg -3' miRNA: 3'- -UGCUGCGgUUCCUGcacCGCGcCGAg -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 75218 | 0.66 | 0.667908 |
Target: 5'- cCGGCGCCcgc-GCG-GGCGCGGC-Cg -3' miRNA: 3'- uGCUGCGGuuccUGCaCCGCGCCGaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 20486 | 0.66 | 0.70747 |
Target: 5'- uCGGCGUUggGGGCGgcggcgccaGcGCGCGGC-Cg -3' miRNA: 3'- uGCUGCGGuuCCUGCa--------C-CGCGCCGaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 23232 | 0.66 | 0.667908 |
Target: 5'- cGCGGgGCCGGGGcCGcGGCGgcCGGCcCg -3' miRNA: 3'- -UGCUgCGGUUCCuGCaCCGC--GCCGaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 115586 | 0.66 | 0.667908 |
Target: 5'- gGCGcCGCCAgcgcgucuaGGGACGggacGGgGCGGgaCg -3' miRNA: 3'- -UGCuGCGGU---------UCCUGCa---CCgCGCCgaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 62368 | 0.66 | 0.687778 |
Target: 5'- cACGGCGCCGucGGGGCcgccGUcGGCGCcGCg- -3' miRNA: 3'- -UGCUGCGGU--UCCUG----CA-CCGCGcCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 134321 | 0.66 | 0.687778 |
Target: 5'- cCGGCGCCGGcGGCGcgGGCGCccgcgccgcGCUCg -3' miRNA: 3'- uGCUGCGGUUcCUGCa-CCGCGc--------CGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 52237 | 0.66 | 0.69765 |
Target: 5'- cACGACGCCcc-GuCGgcGGCGCaGCUCg -3' miRNA: 3'- -UGCUGCGGuucCuGCa-CCGCGcCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 49841 | 0.66 | 0.70747 |
Target: 5'- uCGcCGUCGAGGuACaccuugGGCGCGcGCUCg -3' miRNA: 3'- uGCuGCGGUUCC-UGca----CCGCGC-CGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 91265 | 0.66 | 0.677861 |
Target: 5'- gGCGGCGgCAGcGGCGacGGCGCGGaCUg -3' miRNA: 3'- -UGCUGCgGUUcCUGCa-CCGCGCC-GAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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