miRNA display CGI


Results 1 - 20 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 37648 0.66 0.687778
Target:  5'- gGCGGCGCUccuGGGcGACGaGGCGgCGGUg- -3'
miRNA:   3'- -UGCUGCGG---UUC-CUGCaCCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 136845 0.66 0.667908
Target:  5'- cGCGGCGCCc--GGCGUGGCcUGGgaCg -3'
miRNA:   3'- -UGCUGCGGuucCUGCACCGcGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 60907 0.66 0.687778
Target:  5'- gGCGGCGCCGGcGGaagcuccggcugGCGU-GCGCGuccGCUCg -3'
miRNA:   3'- -UGCUGCGGUU-CC------------UGCAcCGCGC---CGAG- -5'
23579 5' -60.4 NC_005261.1 + 75218 0.66 0.667908
Target:  5'- cCGGCGCCcgc-GCG-GGCGCGGC-Cg -3'
miRNA:   3'- uGCUGCGGuuccUGCaCCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 13970 0.66 0.687778
Target:  5'- -gGGCGCgCGGGcGGCGccGCGCGGCg- -3'
miRNA:   3'- ugCUGCG-GUUC-CUGCacCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 23232 0.66 0.667908
Target:  5'- cGCGGgGCCGGGGcCGcGGCGgcCGGCcCg -3'
miRNA:   3'- -UGCUgCGGUUCCuGCaCCGC--GCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 84876 0.66 0.687778
Target:  5'- gGCGGCgGCCGaaagcgcggcgGGGGCG-GGCGCagaGGCg- -3'
miRNA:   3'- -UGCUG-CGGU-----------UCCUGCaCCGCG---CCGag -5'
23579 5' -60.4 NC_005261.1 + 85784 0.66 0.686788
Target:  5'- gACGcGCGCCGGGGAccuCGUGGCccuggacGCGGaCg- -3'
miRNA:   3'- -UGC-UGCGGUUCCU---GCACCG-------CGCC-Gag -5'
23579 5' -60.4 NC_005261.1 + 82609 0.66 0.677861
Target:  5'- gACGACGCgGAGGAC---GCGCuGCUg -3'
miRNA:   3'- -UGCUGCGgUUCCUGcacCGCGcCGAg -5'
23579 5' -60.4 NC_005261.1 + 124166 0.66 0.667908
Target:  5'- gACGugGCCcuGGACGcGGCcugccuGCGgaccGCUCg -3'
miRNA:   3'- -UGCugCGGuuCCUGCaCCG------CGC----CGAG- -5'
23579 5' -60.4 NC_005261.1 + 92284 0.66 0.687778
Target:  5'- aACGGCGCCcuGG-CGgcccucGcGCGCGGCg- -3'
miRNA:   3'- -UGCUGCGGuuCCuGCa-----C-CGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 19367 0.66 0.677861
Target:  5'- cCGAgGCCAGGGcCGcgGGCGCGccgccCUCc -3'
miRNA:   3'- uGCUgCGGUUCCuGCa-CCGCGCc----GAG- -5'
23579 5' -60.4 NC_005261.1 + 44298 0.66 0.683816
Target:  5'- gGCGGCGCCcgcGGACGgcgcaagcccgcgGGCGCcGCg- -3'
miRNA:   3'- -UGCUGCGGuu-CCUGCa------------CCGCGcCGag -5'
23579 5' -60.4 NC_005261.1 + 115586 0.66 0.667908
Target:  5'- gGCGcCGCCAgcgcgucuaGGGACGggacGGgGCGGgaCg -3'
miRNA:   3'- -UGCuGCGGU---------UCCUGCa---CCgCGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 62368 0.66 0.687778
Target:  5'- cACGGCGCCGucGGGGCcgccGUcGGCGCcGCg- -3'
miRNA:   3'- -UGCUGCGGU--UCCUG----CA-CCGCGcCGag -5'
23579 5' -60.4 NC_005261.1 + 80569 0.66 0.687778
Target:  5'- cUGGCGCUcgcgcagucucGGGGGCGUGcucGgGCGGCUg -3'
miRNA:   3'- uGCUGCGG-----------UUCCUGCAC---CgCGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 30008 0.66 0.687778
Target:  5'- cACGuGCGCCAugcuGGAgCGcgccgugcUGGCGCaGCUCu -3'
miRNA:   3'- -UGC-UGCGGUu---CCU-GC--------ACCGCGcCGAG- -5'
23579 5' -60.4 NC_005261.1 + 91600 0.66 0.667908
Target:  5'- cACGuACGUCAAGGACGgcuucuggGGCGCcuucgGGgaCg -3'
miRNA:   3'- -UGC-UGCGGUUCCUGCa-------CCGCG-----CCgaG- -5'
23579 5' -60.4 NC_005261.1 + 78964 0.66 0.677861
Target:  5'- gGCGAcaCGCCGugcgacGCGUGGCGcCGGCg- -3'
miRNA:   3'- -UGCU--GCGGUucc---UGCACCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 91265 0.66 0.677861
Target:  5'- gGCGGCGgCAGcGGCGacGGCGCGGaCUg -3'
miRNA:   3'- -UGCUGCgGUUcCUGCa-CCGCGCC-GAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.