miRNA display CGI


Results 1 - 20 of 544 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 31598 0.74 0.264031
Target:  5'- gACGuCGCCGAGcuCGUcGCGCGGCUCc -3'
miRNA:   3'- -UGCuGCGGUUCcuGCAcCGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 36865 0.75 0.223817
Target:  5'- -aGGCGCCGGagcuGGACGUGGCcGCGGUg- -3'
miRNA:   3'- ugCUGCGGUU----CCUGCACCG-CGCCGag -5'
23579 5' -60.4 NC_005261.1 + 31793 0.75 0.234746
Target:  5'- gACGugGCCGAcugggcGGGCGUGGacCGCGGCcCg -3'
miRNA:   3'- -UGCugCGGUU------CCUGCACC--GCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 60691 0.75 0.236985
Target:  5'- gGCGGCGCCGuaccagcccggcaucGGGgGCGggGGCGCGGCg- -3'
miRNA:   3'- -UGCUGCGGU---------------UCC-UGCa-CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 31885 0.75 0.243808
Target:  5'- cGCGGCGgCGGGGGCGgacgcggcggcggGGcCGUGGCUCa -3'
miRNA:   3'- -UGCUGCgGUUCCUGCa------------CC-GCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 51639 0.75 0.251385
Target:  5'- cCGACGCCAAGGAC--GGCGCcgccgccGGCUUc -3'
miRNA:   3'- uGCUGCGGUUCCUGcaCCGCG-------CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 17631 0.75 0.251975
Target:  5'- cACGGCGCCGAGGcCGcaGGCGaCGGC-Ca -3'
miRNA:   3'- -UGCUGCGGUUCCuGCa-CCGC-GCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 105707 0.74 0.257946
Target:  5'- cCGGgGCCGGGGcCG-GGCGCGGCg- -3'
miRNA:   3'- uGCUgCGGUUCCuGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 36246 0.74 0.264031
Target:  5'- uACGACGCCGugacguaccuggAGGGCGaccUGGCGgccgugcccCGGCUCg -3'
miRNA:   3'- -UGCUGCGGU------------UCCUGC---ACCGC---------GCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 136402 0.75 0.218516
Target:  5'- cGCGcGCGCCGAGGcCGcuuacGCGCGGCUCu -3'
miRNA:   3'- -UGC-UGCGGUUCCuGCac---CGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 78635 0.76 0.208237
Target:  5'- cGCGcCGCgGAGGugGUggcGGCGCGGCa- -3'
miRNA:   3'- -UGCuGCGgUUCCugCA---CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 70439 0.76 0.208237
Target:  5'- gGCGGCGCCGAGG-CGgaggagGGgGCGGC-Cg -3'
miRNA:   3'- -UGCUGCGGUUCCuGCa-----CCgCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 137581 0.82 0.081725
Target:  5'- uCGGCGCCGGGGACGcGGCGCuGGCg- -3'
miRNA:   3'- uGCUGCGGUUCCUGCaCCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 79411 0.8 0.108662
Target:  5'- -gGGUGCCugGAGGACGUGGCGCGGCg- -3'
miRNA:   3'- ugCUGCGG--UUCCUGCACCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 8069 0.8 0.117346
Target:  5'- cCGGCGCCGcugacgguggAGGACGUGGUGC-GCUCg -3'
miRNA:   3'- uGCUGCGGU----------UCCUGCACCGCGcCGAG- -5'
23579 5' -60.4 NC_005261.1 + 43613 0.79 0.120382
Target:  5'- gACGGCGCCGGcGGCGgcgagGGCGCGcGCUCg -3'
miRNA:   3'- -UGCUGCGGUUcCUGCa----CCGCGC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 8940 0.79 0.136684
Target:  5'- -gGGCGCCGGGGGCG-GGCGgGGCg- -3'
miRNA:   3'- ugCUGCGGUUCCUGCaCCGCgCCGag -5'
23579 5' -60.4 NC_005261.1 + 11698 0.77 0.16292
Target:  5'- cGCGugGCCGAGGcGCGgcgGGCGCgGGCg- -3'
miRNA:   3'- -UGCugCGGUUCC-UGCa--CCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 105140 0.77 0.167019
Target:  5'- cCGACGCaGGGGAUGUGGCGgCGGC-Cg -3'
miRNA:   3'- uGCUGCGgUUCCUGCACCGC-GCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 117890 0.77 0.179876
Target:  5'- cGCGGCaGCCGcGGGCGUcgcucGuGCGCGGCUCg -3'
miRNA:   3'- -UGCUG-CGGUuCCUGCA-----C-CGCGCCGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.