Results 1 - 20 of 544 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 5486 | 0.66 | 0.70747 |
Target: 5'- cGCGcGCGCCGGGGGguagcUGgGGcCGCGGCa- -3' miRNA: 3'- -UGC-UGCGGUUCCU-----GCaCC-GCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 109875 | 0.66 | 0.717229 |
Target: 5'- aGCGGgGCCcgcGGGCG-GGCGCcccggGGCUa -3' miRNA: 3'- -UGCUgCGGuu-CCUGCaCCGCG-----CCGAg -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 131494 | 0.66 | 0.717229 |
Target: 5'- uCGACGCCuucuuccGGcACGUGcGCGCGcaGUUCa -3' miRNA: 3'- uGCUGCGGuu-----CC-UGCAC-CGCGC--CGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 82173 | 0.66 | 0.70747 |
Target: 5'- cGCGGCGCgGAaGGCGcGGCGUGcGCa- -3' miRNA: 3'- -UGCUGCGgUUcCUGCaCCGCGC-CGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 77662 | 0.66 | 0.70747 |
Target: 5'- cCGGCGCCugcAGG-CGcagGGCGCGGaCg- -3' miRNA: 3'- uGCUGCGGu--UCCuGCa--CCGCGCC-Gag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 89093 | 0.66 | 0.717229 |
Target: 5'- uGCGGC-CCGGGcGCGcUGGCGCGcGCg- -3' miRNA: 3'- -UGCUGcGGUUCcUGC-ACCGCGC-CGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 133716 | 0.66 | 0.70747 |
Target: 5'- cCGGCGCCGucuACGUcGGgGCGGCg- -3' miRNA: 3'- uGCUGCGGUuccUGCA-CCgCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 82350 | 0.66 | 0.70747 |
Target: 5'- cCGGCGCaCGucGGCGUcGGCGCGcGCg- -3' miRNA: 3'- uGCUGCG-GUucCUGCA-CCGCGC-CGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 16261 | 0.66 | 0.70747 |
Target: 5'- -gGGcCGCCGGGGcCG-GGCuuCGGCUCg -3' miRNA: 3'- ugCU-GCGGUUCCuGCaCCGc-GCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 3852 | 0.66 | 0.69765 |
Target: 5'- aGCGGCGCC---GGCGccGCGCGGC-Cg -3' miRNA: 3'- -UGCUGCGGuucCUGCacCGCGCCGaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 114049 | 1.09 | 0.00098 |
Target: 5'- gACGACGCCAAGGACGUGGCGCGGCUCa -3' miRNA: 3'- -UGCUGCGGUUCCUGCACCGCGCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 54351 | 0.66 | 0.717229 |
Target: 5'- uCGAUgGCCAgucccAGGuccGCG-GGCaGCGGCUCg -3' miRNA: 3'- uGCUG-CGGU-----UCC---UGCaCCG-CGCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 67670 | 0.66 | 0.717229 |
Target: 5'- cGCGGCGCCAGGcGCGgUGaGCGCGuCa- -3' miRNA: 3'- -UGCUGCGGUUCcUGC-AC-CGCGCcGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 75471 | 0.66 | 0.70747 |
Target: 5'- -aGGCGCC--GGGCGgcGGCGCGGg-- -3' miRNA: 3'- ugCUGCGGuuCCUGCa-CCGCGCCgag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 16422 | 0.66 | 0.70747 |
Target: 5'- -aGAgGCCcccucGACGgcgGGCgGCGGCUCg -3' miRNA: 3'- ugCUgCGGuuc--CUGCa--CCG-CGCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 54216 | 0.66 | 0.717229 |
Target: 5'- cCGAUGaCCAgcccgcAGGucACGcGGCGCGcGCUCa -3' miRNA: 3'- uGCUGC-GGU------UCC--UGCaCCGCGC-CGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 35766 | 0.66 | 0.70453 |
Target: 5'- gGCGGCucggGCCGAgacaggaggcccgcGGGCGccaUGGCGCGGgaCg -3' miRNA: 3'- -UGCUG----CGGUU--------------CCUGC---ACCGCGCCgaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 131585 | 0.66 | 0.69765 |
Target: 5'- cGCGACgGCCGAGGccuACGcGcGCGCGcGCa- -3' miRNA: 3'- -UGCUG-CGGUUCC---UGCaC-CGCGC-CGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 108744 | 0.66 | 0.70747 |
Target: 5'- gGCGGCGCCGcGG-CGUccgcGGCGCGccGCg- -3' miRNA: 3'- -UGCUGCGGUuCCuGCA----CCGCGC--CGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 136621 | 0.66 | 0.70747 |
Target: 5'- cGCGcGCGCCGAGGGCGgcgGGaa-GGCc- -3' miRNA: 3'- -UGC-UGCGGUUCCUGCa--CCgcgCCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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