miRNA display CGI


Results 1 - 20 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 114049 1.09 0.00098
Target:  5'- gACGACGCCAAGGACGUGGCGCGGCUCa -3'
miRNA:   3'- -UGCUGCGGUUCCUGCACCGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 132630 0.88 0.033217
Target:  5'- cUGGCGCCGAGGACGcgGGCGCGGCg- -3'
miRNA:   3'- uGCUGCGGUUCCUGCa-CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 73669 0.84 0.062872
Target:  5'- cACGACGCgGAGGGCG-GGCGCgGGCUUa -3'
miRNA:   3'- -UGCUGCGgUUCCUGCaCCGCG-CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 59194 0.83 0.069848
Target:  5'- gACGACGCCAAGGGCGcgGGCGCcccgGGCg- -3'
miRNA:   3'- -UGCUGCGGUUCCUGCa-CCGCG----CCGag -5'
23579 5' -60.4 NC_005261.1 + 33063 0.82 0.081725
Target:  5'- uCGGCGCCGGGGACGcGGCGCuGGCg- -3'
miRNA:   3'- uGCUGCGGUUCCUGCaCCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 137581 0.82 0.081725
Target:  5'- uCGGCGCCGGGGACGcGGCGCuGGCg- -3'
miRNA:   3'- uGCUGCGGUUCCUGCaCCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 44423 0.81 0.098018
Target:  5'- cGCGuACGCCGAcGACGUGGaGCGGCUCu -3'
miRNA:   3'- -UGC-UGCGGUUcCUGCACCgCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 79411 0.8 0.108662
Target:  5'- -gGGUGCCugGAGGACGUGGCGCGGCg- -3'
miRNA:   3'- ugCUGCGG--UUCCUGCACCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 8069 0.8 0.117346
Target:  5'- cCGGCGCCGcugacgguggAGGACGUGGUGC-GCUCg -3'
miRNA:   3'- uGCUGCGGU----------UCCUGCACCGCGcCGAG- -5'
23579 5' -60.4 NC_005261.1 + 43613 0.79 0.120382
Target:  5'- gACGGCGCCGGcGGCGgcgagGGCGCGcGCUCg -3'
miRNA:   3'- -UGCUGCGGUUcCUGCa----CCGCGC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 43180 0.79 0.120382
Target:  5'- uACGGCGCCGccggcgAGGcagAgGUGGUGCGGCUCg -3'
miRNA:   3'- -UGCUGCGGU------UCC---UgCACCGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 8940 0.79 0.136684
Target:  5'- -gGGCGCCGGGGGCG-GGCGgGGCg- -3'
miRNA:   3'- ugCUGCGGUUCCUGCaCCGCgCCGag -5'
23579 5' -60.4 NC_005261.1 + 52997 0.78 0.14018
Target:  5'- gGCGGCGCCcAGG-CGUcGGCGCaGCUCg -3'
miRNA:   3'- -UGCUGCGGuUCCuGCA-CCGCGcCGAG- -5'
23579 5' -60.4 NC_005261.1 + 43098 0.78 0.143757
Target:  5'- cGCG-CGCUacGAGGACGUGGCGCGGg-- -3'
miRNA:   3'- -UGCuGCGG--UUCCUGCACCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 11698 0.77 0.16292
Target:  5'- cGCGugGCCGAGGcGCGgcgGGCGCgGGCg- -3'
miRNA:   3'- -UGCugCGGUUCC-UGCa--CCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 623 0.77 0.167019
Target:  5'- cCGACGCaGGGGAUGUGGCGgCGGC-Cg -3'
miRNA:   3'- uGCUGCGgUUCCUGCACCGC-GCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 105140 0.77 0.167019
Target:  5'- cCGACGCaGGGGAUGUGGCGgCGGC-Cg -3'
miRNA:   3'- uGCUGCGgUUCCUGCACCGC-GCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 117890 0.77 0.179876
Target:  5'- cGCGGCaGCCGcGGGCGUcgcucGuGCGCGGCUCg -3'
miRNA:   3'- -UGCUG-CGGUuCCUGCA-----C-CGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 134987 0.77 0.184352
Target:  5'- gACGGgGCCGccGGGGCGccccUGGCGCGGCg- -3'
miRNA:   3'- -UGCUgCGGU--UCCUGC----ACCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 108167 0.76 0.188928
Target:  5'- cGCGucCGCCAGGGcGCGcGGcCGCGGCUCc -3'
miRNA:   3'- -UGCu-GCGGUUCC-UGCaCC-GCGCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.