Results 1 - 20 of 544 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 131494 | 0.66 | 0.717229 |
Target: 5'- uCGACGCCuucuuccGGcACGUGcGCGCGcaGUUCa -3' miRNA: 3'- uGCUGCGGuu-----CC-UGCAC-CGCGC--CGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 54351 | 0.66 | 0.717229 |
Target: 5'- uCGAUgGCCAgucccAGGuccGCG-GGCaGCGGCUCg -3' miRNA: 3'- uGCUG-CGGU-----UCC---UGCaCCG-CGCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 54216 | 0.66 | 0.717229 |
Target: 5'- cCGAUGaCCAgcccgcAGGucACGcGGCGCGcGCUCa -3' miRNA: 3'- uGCUGC-GGU------UCC--UGCaCCGCGC-CGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 89093 | 0.66 | 0.717229 |
Target: 5'- uGCGGC-CCGGGcGCGcUGGCGCGcGCg- -3' miRNA: 3'- -UGCUGcGGUUCcUGC-ACCGCGC-CGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 21875 | 0.66 | 0.717229 |
Target: 5'- cGCGGCGgCAcGGACGaacccgcacggGGCGauggGGCUCu -3' miRNA: 3'- -UGCUGCgGUuCCUGCa----------CCGCg---CCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 69569 | 0.66 | 0.717229 |
Target: 5'- -gGACGCCGGcGGCGcgGGCGgCGGUg- -3' miRNA: 3'- ugCUGCGGUUcCUGCa-CCGC-GCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 6618 | 0.66 | 0.717229 |
Target: 5'- -gGGCGCCAGGcGcgcguACGUGcGCGCGcGCg- -3' miRNA: 3'- ugCUGCGGUUC-C-----UGCAC-CGCGC-CGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 23019 | 0.66 | 0.717229 |
Target: 5'- cACGaucGCGCCGcGGACGcacgGGCGCugGGC-Cg -3' miRNA: 3'- -UGC---UGCGGUuCCUGCa---CCGCG--CCGaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 37507 | 0.66 | 0.717229 |
Target: 5'- cGCG-CGCgCGcGcGGCGcGGcCGCGGCUCg -3' miRNA: 3'- -UGCuGCG-GUuC-CUGCaCC-GCGCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 86293 | 0.66 | 0.717229 |
Target: 5'- gUGGCGCCGgcgacgagcGGGACcaGGCcGCGGC-Cg -3' miRNA: 3'- uGCUGCGGU---------UCCUGcaCCG-CGCCGaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 67670 | 0.66 | 0.717229 |
Target: 5'- cGCGGCGCCAGGcGCGgUGaGCGCGuCa- -3' miRNA: 3'- -UGCUGCGGUUCcUGC-AC-CGCGCcGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 109875 | 0.66 | 0.717229 |
Target: 5'- aGCGGgGCCcgcGGGCG-GGCGCcccggGGCUa -3' miRNA: 3'- -UGCUgCGGuu-CCUGCaCCGCG-----CCGAg -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 7428 | 0.66 | 0.716256 |
Target: 5'- uCGACGUauuGGGCGUcguccgcGGUGCGGC-Ca -3' miRNA: 3'- uGCUGCGguuCCUGCA-------CCGCGCCGaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 53583 | 0.66 | 0.70747 |
Target: 5'- gGCGGCGCCAgccGGGACaacacgcugGUGGagGC-GCUCc -3' miRNA: 3'- -UGCUGCGGU---UCCUG---------CACCg-CGcCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 49841 | 0.66 | 0.70747 |
Target: 5'- uCGcCGUCGAGGuACaccuugGGCGCGcGCUCg -3' miRNA: 3'- uGCuGCGGUUCC-UGca----CCGCGC-CGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 79683 | 0.66 | 0.70747 |
Target: 5'- cACGACGgCGcAGGAgccCG-GGCGgCGGCUg -3' miRNA: 3'- -UGCUGCgGU-UCCU---GCaCCGC-GCCGAg -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 78201 | 0.66 | 0.70747 |
Target: 5'- uCGGCGCCGAcGGC--GGCG-GGCUCu -3' miRNA: 3'- uGCUGCGGUUcCUGcaCCGCgCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 2522 | 0.66 | 0.70747 |
Target: 5'- uACGAgGCUggGcAgGUGGCGaGGCUUa -3' miRNA: 3'- -UGCUgCGGuuCcUgCACCGCgCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 20486 | 0.66 | 0.70747 |
Target: 5'- uCGGCGUUggGGGCGgcggcgccaGcGCGCGGC-Cg -3' miRNA: 3'- uGCUGCGGuuCCUGCa--------C-CGCGCCGaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 75946 | 0.66 | 0.70747 |
Target: 5'- cGCGGCGCCGAcGuGAUGUaccacaacgGGCGCcGCUa -3' miRNA: 3'- -UGCUGCGGUU-C-CUGCA---------CCGCGcCGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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