miRNA display CGI


Results 1 - 20 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 72 0.7 0.472421
Target:  5'- gGCG-CGCgCGGGGGCGgGGUGCGGggCg -3'
miRNA:   3'- -UGCuGCG-GUUCCUGCaCCGCGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 423 0.67 0.607882
Target:  5'- cGCGAgCaCCAGGGGCGgcgccGGCGCgGGCg- -3'
miRNA:   3'- -UGCU-GcGGUUCCUGCa----CCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 463 0.67 0.657928
Target:  5'- cGCGACgGCCGgcGGGA--UGGCGCGGg-- -3'
miRNA:   3'- -UGCUG-CGGU--UCCUgcACCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 523 0.68 0.56811
Target:  5'- -gGGCGCgGGcGGGCGgggGGCagggcggacgGCGGCUCg -3'
miRNA:   3'- ugCUGCGgUU-CCUGCa--CCG----------CGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 623 0.77 0.167019
Target:  5'- cCGACGCaGGGGAUGUGGCGgCGGC-Cg -3'
miRNA:   3'- uGCUGCGgUUCCUGCACCGC-GCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 1022 0.67 0.657928
Target:  5'- gGCGGgugggcuuuUGCgGAGGGCGgcgGGCGgCGGCg- -3'
miRNA:   3'- -UGCU---------GCGgUUCCUGCa--CCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 1062 0.69 0.529988
Target:  5'- aGCGGCGCgGGGGGCuggccccgcuccagGGCGagccCGGCUCg -3'
miRNA:   3'- -UGCUGCGgUUCCUGca------------CCGC----GCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 1189 0.74 0.257946
Target:  5'- cCGGgGCCGGGGcCG-GGCGCGGCg- -3'
miRNA:   3'- uGCUgCGGUUCCuGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 1281 0.68 0.578004
Target:  5'- cCGGCGCCcAGGcc--GGCGgGGCUCc -3'
miRNA:   3'- uGCUGCGGuUCCugcaCCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 1399 0.66 0.69765
Target:  5'- -gGGCGCCGcGGcCGcGGCGgCGGCg- -3'
miRNA:   3'- ugCUGCGGUuCCuGCaCCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 1451 0.7 0.472421
Target:  5'- gGCGGCGCCucGG-CGUGcggcuccagcaGCGCGGC-Cg -3'
miRNA:   3'- -UGCUGCGGuuCCuGCAC-----------CGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 1799 0.69 0.529022
Target:  5'- uGCGACGCCcgcgaGGGGGCcUGcGacuGCGGCUCc -3'
miRNA:   3'- -UGCUGCGG-----UUCCUGcAC-Cg--CGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 2522 0.66 0.70747
Target:  5'- uACGAgGCUggGcAgGUGGCGaGGCUUa -3'
miRNA:   3'- -UGCUgCGGuuCcUgCACCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 3543 0.7 0.481651
Target:  5'- uCGGCGCgCAGcGcGGCG-GGCGCGGCg- -3'
miRNA:   3'- uGCUGCG-GUU-C-CUGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 3852 0.66 0.69765
Target:  5'- aGCGGCGCC---GGCGccGCGCGGC-Cg -3'
miRNA:   3'- -UGCUGCGGuucCUGCacCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 4343 0.66 0.691732
Target:  5'- aGCG-CGCCGcGGGCuugcgcagaccacagGUaGGCGCGGCa- -3'
miRNA:   3'- -UGCuGCGGUuCCUG---------------CA-CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 4455 0.69 0.500368
Target:  5'- uGCGcCGCaCGAGGGCGUGGaggcaCGgGGCgUCg -3'
miRNA:   3'- -UGCuGCG-GUUCCUGCACC-----GCgCCG-AG- -5'
23579 5' -60.4 NC_005261.1 + 4528 0.68 0.578004
Target:  5'- gACGGCGCCGGGGuc---GCGCaGCUCc -3'
miRNA:   3'- -UGCUGCGGUUCCugcacCGCGcCGAG- -5'
23579 5' -60.4 NC_005261.1 + 5229 0.68 0.578004
Target:  5'- gAUGAgGUCGuacAGGucgaGCGUGGC-CGGCUCg -3'
miRNA:   3'- -UGCUgCGGU---UCC----UGCACCGcGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 5344 0.7 0.480724
Target:  5'- cGCGGCGCCcggcuugccgaagAAGGGCa-GGCGCaGGCUg -3'
miRNA:   3'- -UGCUGCGG-------------UUCCUGcaCCGCG-CCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.