miRNA display CGI


Results 1 - 20 of 544 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 138194 0.68 0.56811
Target:  5'- -gGGCGCgGGcGGGCGgggGGCagggcggacgGCGGCUCg -3'
miRNA:   3'- ugCUGCGgUU-CCUGCa--CCG----------CGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 138134 0.67 0.657928
Target:  5'- cGCGACgGCCGgcGGGA--UGGCGCGGg-- -3'
miRNA:   3'- -UGCUG-CGGU--UCCUgcACCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 138106 0.67 0.607882
Target:  5'- cGCGAgCaCCAGGGGCGgcgccGGCGCgGGCg- -3'
miRNA:   3'- -UGCU-GcGGUUCCUGCa----CCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 137755 0.7 0.472421
Target:  5'- gGCG-CGCgCGGGGGCGgGGUGCGGggCg -3'
miRNA:   3'- -UGCuGCG-GUUCCUGCaCCGCGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 137581 0.82 0.081725
Target:  5'- uCGGCGCCGGGGACGcGGCGCuGGCg- -3'
miRNA:   3'- uGCUGCGGUUCCUGCaCCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 137431 0.68 0.587935
Target:  5'- gGCGcGCGUgGGGGGCGgcGGCGCGGg-- -3'
miRNA:   3'- -UGC-UGCGgUUCCUGCa-CCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 137034 0.66 0.677861
Target:  5'- aACGGCGUCGguggAGGGCGgaccgucggcaGGCGCGGaggCg -3'
miRNA:   3'- -UGCUGCGGU----UCCUGCa----------CCGCGCCga-G- -5'
23579 5' -60.4 NC_005261.1 + 136889 0.67 0.607882
Target:  5'- -aGACGCUGgugcAGG-CGcGGCGCGGCg- -3'
miRNA:   3'- ugCUGCGGU----UCCuGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 136845 0.66 0.667908
Target:  5'- cGCGGCGCCc--GGCGUGGCcUGGgaCg -3'
miRNA:   3'- -UGCUGCGGuucCUGCACCGcGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 136788 0.66 0.69765
Target:  5'- gGCGAgGCgGugcAGGccaGUGGCG-GGCUCg -3'
miRNA:   3'- -UGCUgCGgU---UCCug-CACCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 136621 0.66 0.70747
Target:  5'- cGCGcGCGCCGAGGGCGgcgGGaa-GGCc- -3'
miRNA:   3'- -UGC-UGCGGUUCCUGCa--CCgcgCCGag -5'
23579 5' -60.4 NC_005261.1 + 136402 0.75 0.218516
Target:  5'- cGCGcGCGCCGAGGcCGcuuacGCGCGGCUCu -3'
miRNA:   3'- -UGC-UGCGGUUCCuGCac---CGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 136144 0.67 0.617885
Target:  5'- cGCGACGC--GGGACcUGGCcuuccGCGGCg- -3'
miRNA:   3'- -UGCUGCGguUCCUGcACCG-----CGCCGag -5'
23579 5' -60.4 NC_005261.1 + 136097 0.7 0.445283
Target:  5'- gGCG-CGCC--GGACGUGaGCGC-GCUCg -3'
miRNA:   3'- -UGCuGCGGuuCCUGCAC-CGCGcCGAG- -5'
23579 5' -60.4 NC_005261.1 + 135958 0.69 0.528057
Target:  5'- gGCGGCGCCGcccggcgAGGACGa-GCGcCGGCg- -3'
miRNA:   3'- -UGCUGCGGU-------UCCUGCacCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 135901 0.73 0.296213
Target:  5'- -gGACcCCGAGGACGUGcGCGUGGUg- -3'
miRNA:   3'- ugCUGcGGUUCCUGCAC-CGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 135698 0.69 0.542602
Target:  5'- cGCGGCGCUGGcGGCcuacugccgccccgaGUcgcGGCGCGGCUCg -3'
miRNA:   3'- -UGCUGCGGUUcCUG---------------CA---CCGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 135523 0.7 0.454233
Target:  5'- cCGGgGCCAGGGGCccGGCGcCGGC-Ca -3'
miRNA:   3'- uGCUgCGGUUCCUGcaCCGC-GCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 134987 0.77 0.184352
Target:  5'- gACGGgGCCGccGGGGCGccccUGGCGCGGCg- -3'
miRNA:   3'- -UGCUgCGGU--UCCUGC----ACCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 134945 0.69 0.529022
Target:  5'- gACGA-GCCGAuGGGCGagGGCGcCGGCg- -3'
miRNA:   3'- -UGCUgCGGUU-CCUGCa-CCGC-GCCGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.