miRNA display CGI


Results 21 - 40 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 75946 0.66 0.70747
Target:  5'- cGCGGCGCCGAcGuGAUGUaccacaacgGGCGCcGCUa -3'
miRNA:   3'- -UGCUGCGGUU-C-CUGCA---------CCGCGcCGAg -5'
23579 5' -60.4 NC_005261.1 + 41870 0.66 0.70747
Target:  5'- cGCGgccGCGCCAggccagucAGGGCGUcaGGUGCGcGCg- -3'
miRNA:   3'- -UGC---UGCGGU--------UCCUGCA--CCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 31980 0.66 0.70747
Target:  5'- aGCGGCGgCGGcGGccCGguagGGCGCGGCg- -3'
miRNA:   3'- -UGCUGCgGUU-CCu-GCa---CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 78201 0.66 0.70747
Target:  5'- uCGGCGCCGAcGGC--GGCG-GGCUCu -3'
miRNA:   3'- uGCUGCGGUUcCUGcaCCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 79970 0.66 0.70747
Target:  5'- aGCG-CGgCGAGcgcGGCGcGGCGCGGCa- -3'
miRNA:   3'- -UGCuGCgGUUC---CUGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 53583 0.66 0.70747
Target:  5'- gGCGGCGCCAgccGGGACaacacgcugGUGGagGC-GCUCc -3'
miRNA:   3'- -UGCUGCGGU---UCCUG---------CACCg-CGcCGAG- -5'
23579 5' -60.4 NC_005261.1 + 79683 0.66 0.70747
Target:  5'- cACGACGgCGcAGGAgccCG-GGCGgCGGCUg -3'
miRNA:   3'- -UGCUGCgGU-UCCU---GCaCCGC-GCCGAg -5'
23579 5' -60.4 NC_005261.1 + 90845 0.66 0.70747
Target:  5'- gGCGGCGCCGccccGACGguUGuGCGCGcGCUg -3'
miRNA:   3'- -UGCUGCGGUuc--CUGC--AC-CGCGC-CGAg -5'
23579 5' -60.4 NC_005261.1 + 82173 0.66 0.70747
Target:  5'- cGCGGCGCgGAaGGCGcGGCGUGcGCa- -3'
miRNA:   3'- -UGCUGCGgUUcCUGCaCCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 50053 0.66 0.70747
Target:  5'- cCGGCGCCGccGGCGUcgccccGGCcCGGCUg -3'
miRNA:   3'- uGCUGCGGUucCUGCA------CCGcGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 77662 0.66 0.70747
Target:  5'- cCGGCGCCugcAGG-CGcagGGCGCGGaCg- -3'
miRNA:   3'- uGCUGCGGu--UCCuGCa--CCGCGCC-Gag -5'
23579 5' -60.4 NC_005261.1 + 108744 0.66 0.70747
Target:  5'- gGCGGCGCCGcGG-CGUccgcGGCGCGccGCg- -3'
miRNA:   3'- -UGCUGCGGUuCCuGCA----CCGCGC--CGag -5'
23579 5' -60.4 NC_005261.1 + 136621 0.66 0.70747
Target:  5'- cGCGcGCGCCGAGGGCGgcgGGaa-GGCc- -3'
miRNA:   3'- -UGC-UGCGGUUCCUGCa--CCgcgCCGag -5'
23579 5' -60.4 NC_005261.1 + 85906 0.66 0.70747
Target:  5'- -gGGCGCCAAGGACGgcgagGaGUGCGaCg- -3'
miRNA:   3'- ugCUGCGGUUCCUGCa----C-CGCGCcGag -5'
23579 5' -60.4 NC_005261.1 + 92316 0.66 0.70747
Target:  5'- -gGACGgCGAGGGCGaGGaCGaCGGCg- -3'
miRNA:   3'- ugCUGCgGUUCCUGCaCC-GC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 133716 0.66 0.70747
Target:  5'- cCGGCGCCGucuACGUcGGgGCGGCg- -3'
miRNA:   3'- uGCUGCGGUuccUGCA-CCgCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 82350 0.66 0.70747
Target:  5'- cCGGCGCaCGucGGCGUcGGCGCGcGCg- -3'
miRNA:   3'- uGCUGCG-GUucCUGCA-CCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 46736 0.66 0.70747
Target:  5'- -aGGCGCgcGGGGCG-GGCGgCGGC-Cg -3'
miRNA:   3'- ugCUGCGguUCCUGCaCCGC-GCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 2522 0.66 0.70747
Target:  5'- uACGAgGCUggGcAgGUGGCGaGGCUUa -3'
miRNA:   3'- -UGCUgCGGuuCcUgCACCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 49841 0.66 0.70747
Target:  5'- uCGcCGUCGAGGuACaccuugGGCGCGcGCUCg -3'
miRNA:   3'- uGCuGCGGUUCC-UGca----CCGCGC-CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.