Results 21 - 40 of 544 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 16422 | 0.66 | 0.70747 |
Target: 5'- -aGAgGCCcccucGACGgcgGGCgGCGGCUCg -3' miRNA: 3'- ugCUgCGGuuc--CUGCa--CCG-CGCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 31533 | 0.66 | 0.70747 |
Target: 5'- uGCaGCGCU-GGGACGcgaucGGCGCGGCccUCg -3' miRNA: 3'- -UGcUGCGGuUCCUGCa----CCGCGCCG--AG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 75946 | 0.66 | 0.70747 |
Target: 5'- cGCGGCGCCGAcGuGAUGUaccacaacgGGCGCcGCUa -3' miRNA: 3'- -UGCUGCGGUU-C-CUGCA---------CCGCGcCGAg -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 31980 | 0.66 | 0.70747 |
Target: 5'- aGCGGCGgCGGcGGccCGguagGGCGCGGCg- -3' miRNA: 3'- -UGCUGCgGUU-CCu-GCa---CCGCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 79683 | 0.66 | 0.70747 |
Target: 5'- cACGACGgCGcAGGAgccCG-GGCGgCGGCUg -3' miRNA: 3'- -UGCUGCgGU-UCCU---GCaCCGC-GCCGAg -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 78201 | 0.66 | 0.70747 |
Target: 5'- uCGGCGCCGAcGGC--GGCG-GGCUCu -3' miRNA: 3'- uGCUGCGGUUcCUGcaCCGCgCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 26577 | 0.66 | 0.70747 |
Target: 5'- cGCGGCGCgGgAGGGCuGggaGGCGgCGGCg- -3' miRNA: 3'- -UGCUGCGgU-UCCUG-Ca--CCGC-GCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 20486 | 0.66 | 0.70747 |
Target: 5'- uCGGCGUUggGGGCGgcggcgccaGcGCGCGGC-Cg -3' miRNA: 3'- uGCUGCGGuuCCUGCa--------C-CGCGCCGaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 2522 | 0.66 | 0.70747 |
Target: 5'- uACGAgGCUggGcAgGUGGCGaGGCUUa -3' miRNA: 3'- -UGCUgCGGuuCcUgCACCGCgCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 46736 | 0.66 | 0.70747 |
Target: 5'- -aGGCGCgcGGGGCG-GGCGgCGGC-Cg -3' miRNA: 3'- ugCUGCGguUCCUGCaCCGC-GCCGaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 82350 | 0.66 | 0.70747 |
Target: 5'- cCGGCGCaCGucGGCGUcGGCGCGcGCg- -3' miRNA: 3'- uGCUGCG-GUucCUGCA-CCGCGC-CGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 133716 | 0.66 | 0.70747 |
Target: 5'- cCGGCGCCGucuACGUcGGgGCGGCg- -3' miRNA: 3'- uGCUGCGGUuccUGCA-CCgCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 92316 | 0.66 | 0.70747 |
Target: 5'- -gGACGgCGAGGGCGaGGaCGaCGGCg- -3' miRNA: 3'- ugCUGCgGUUCCUGCaCC-GC-GCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 85906 | 0.66 | 0.70747 |
Target: 5'- -gGGCGCCAAGGACGgcgagGaGUGCGaCg- -3' miRNA: 3'- ugCUGCGGUUCCUGCa----C-CGCGCcGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 136621 | 0.66 | 0.70747 |
Target: 5'- cGCGcGCGCCGAGGGCGgcgGGaa-GGCc- -3' miRNA: 3'- -UGC-UGCGGUUCCUGCa--CCgcgCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 108744 | 0.66 | 0.70747 |
Target: 5'- gGCGGCGCCGcGG-CGUccgcGGCGCGccGCg- -3' miRNA: 3'- -UGCUGCGGUuCCuGCA----CCGCGC--CGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 77662 | 0.66 | 0.70747 |
Target: 5'- cCGGCGCCugcAGG-CGcagGGCGCGGaCg- -3' miRNA: 3'- uGCUGCGGu--UCCuGCa--CCGCGCC-Gag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 90845 | 0.66 | 0.70747 |
Target: 5'- gGCGGCGCCGccccGACGguUGuGCGCGcGCUg -3' miRNA: 3'- -UGCUGCGGUuc--CUGC--AC-CGCGC-CGAg -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 82173 | 0.66 | 0.70747 |
Target: 5'- cGCGGCGCgGAaGGCGcGGCGUGcGCa- -3' miRNA: 3'- -UGCUGCGgUUcCUGCaCCGCGC-CGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 50053 | 0.66 | 0.70747 |
Target: 5'- cCGGCGCCGccGGCGUcgccccGGCcCGGCUg -3' miRNA: 3'- uGCUGCGGUucCUGCA------CCGcGCCGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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