miRNA display CGI


Results 41 - 60 of 544 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 78201 0.66 0.70747
Target:  5'- uCGGCGCCGAcGGC--GGCG-GGCUCu -3'
miRNA:   3'- uGCUGCGGUUcCUGcaCCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 46736 0.66 0.70747
Target:  5'- -aGGCGCgcGGGGCG-GGCGgCGGC-Cg -3'
miRNA:   3'- ugCUGCGguUCCUGCaCCGC-GCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 20486 0.66 0.70747
Target:  5'- uCGGCGUUggGGGCGgcggcgccaGcGCGCGGC-Cg -3'
miRNA:   3'- uGCUGCGGuuCCUGCa--------C-CGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 73930 0.66 0.706491
Target:  5'- cGCGACGCgAAacaugcgcacgcuGGACGcGGCGCuGCa- -3'
miRNA:   3'- -UGCUGCGgUU-------------CCUGCaCCGCGcCGag -5'
23579 5' -60.4 NC_005261.1 + 86802 0.66 0.706491
Target:  5'- cACGGCGCgcccggggcccagCAGGGGUG-GGCGCgcgGGCUCc -3'
miRNA:   3'- -UGCUGCG-------------GUUCCUGCaCCGCG---CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 35766 0.66 0.70453
Target:  5'- gGCGGCucggGCCGAgacaggaggcccgcGGGCGccaUGGCGCGGgaCg -3'
miRNA:   3'- -UGCUG----CGGUU--------------CCUGC---ACCGCGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 12915 0.66 0.69765
Target:  5'- -gGACGCCGAGGcCGcGGagcgccCGCGGgUCc -3'
miRNA:   3'- ugCUGCGGUUCCuGCaCC------GCGCCgAG- -5'
23579 5' -60.4 NC_005261.1 + 17840 0.66 0.69765
Target:  5'- -aGACGCCGcucugcucGGuGCGcgagGGCGCGGCg- -3'
miRNA:   3'- ugCUGCGGU--------UCcUGCa---CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 72178 0.66 0.69765
Target:  5'- cCGGCGuCCGA-GACGuUGGCGgCGGC-Cg -3'
miRNA:   3'- uGCUGC-GGUUcCUGC-ACCGC-GCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 48301 0.66 0.69765
Target:  5'- aGCGAgGCCucggGGGGCGcgucgGGCcCgGGCUCg -3'
miRNA:   3'- -UGCUgCGGu---UCCUGCa----CCGcG-CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 15214 0.66 0.69765
Target:  5'- cCGACGCuCGcGGACGccacGGCcGCGGC-Cg -3'
miRNA:   3'- uGCUGCG-GUuCCUGCa---CCG-CGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 131585 0.66 0.69765
Target:  5'- cGCGACgGCCGAGGccuACGcGcGCGCGcGCa- -3'
miRNA:   3'- -UGCUG-CGGUUCC---UGCaC-CGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 105916 0.66 0.69765
Target:  5'- -gGGCGCCGcGGcCGcGGCGgCGGCg- -3'
miRNA:   3'- ugCUGCGGUuCCuGCaCCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 80823 0.66 0.69765
Target:  5'- cGCGGCGCCGGccGCGaucacgGGCGC-GCUCc -3'
miRNA:   3'- -UGCUGCGGUUccUGCa-----CCGCGcCGAG- -5'
23579 5' -60.4 NC_005261.1 + 52237 0.66 0.69765
Target:  5'- cACGACGCCcc-GuCGgcGGCGCaGCUCg -3'
miRNA:   3'- -UGCUGCGGuucCuGCa-CCGCGcCGAG- -5'
23579 5' -60.4 NC_005261.1 + 39434 0.66 0.69765
Target:  5'- cCGGCGCguccgCAGGGccccgagccuccGCGcGGCGCGGCg- -3'
miRNA:   3'- uGCUGCG-----GUUCC------------UGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 1399 0.66 0.69765
Target:  5'- -gGGCGCCGcGGcCGcGGCGgCGGCg- -3'
miRNA:   3'- ugCUGCGGUuCCuGCaCCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 136788 0.66 0.69765
Target:  5'- gGCGAgGCgGugcAGGccaGUGGCG-GGCUCg -3'
miRNA:   3'- -UGCUgCGgU---UCCug-CACCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 108369 0.66 0.69765
Target:  5'- aGCGGCGCC---GGCGccGCGCGGC-Cg -3'
miRNA:   3'- -UGCUGCGGuucCUGCacCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 3852 0.66 0.69765
Target:  5'- aGCGGCGCC---GGCGccGCGCGGC-Cg -3'
miRNA:   3'- -UGCUGCGGuucCUGCacCGCGCCGaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.