miRNA display CGI


Results 21 - 40 of 544 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 5486 0.66 0.70747
Target:  5'- cGCGcGCGCCGGGGGguagcUGgGGcCGCGGCa- -3'
miRNA:   3'- -UGC-UGCGGUUCCU-----GCaCC-GCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 5530 0.67 0.617885
Target:  5'- -gGGCGCC-GGGACG-GGCaCGGC-Ca -3'
miRNA:   3'- ugCUGCGGuUCCUGCaCCGcGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 5774 0.7 0.454233
Target:  5'- cCGGCGCgGAGGGCGgccgaggGGCaCGcGCUCu -3'
miRNA:   3'- uGCUGCGgUUCCUGCa------CCGcGC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 6424 0.73 0.296213
Target:  5'- gGCGgcGCGCCGucAGGcGCGgcgGGCGCGGCgUCg -3'
miRNA:   3'- -UGC--UGCGGU--UCC-UGCa--CCGCGCCG-AG- -5'
23579 5' -60.4 NC_005261.1 + 6618 0.66 0.717229
Target:  5'- -gGGCGCCAGGcGcgcguACGUGcGCGCGcGCg- -3'
miRNA:   3'- ugCUGCGGUUC-C-----UGCAC-CGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 6796 0.7 0.481651
Target:  5'- cGCGGCGCaagGGGGGCGccGGCGCcGCUg -3'
miRNA:   3'- -UGCUGCGg--UUCCUGCa-CCGCGcCGAg -5'
23579 5' -60.4 NC_005261.1 + 7375 0.67 0.607882
Target:  5'- cGCGGCGCCc-GGcCG-GGCGCGcGCg- -3'
miRNA:   3'- -UGCUGCGGuuCCuGCaCCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 7428 0.66 0.716256
Target:  5'- uCGACGUauuGGGCGUcguccgcGGUGCGGC-Ca -3'
miRNA:   3'- uGCUGCGguuCCUGCA-------CCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 8069 0.8 0.117346
Target:  5'- cCGGCGCCGcugacgguggAGGACGUGGUGC-GCUCg -3'
miRNA:   3'- uGCUGCGGU----------UCCUGCACCGCGcCGAG- -5'
23579 5' -60.4 NC_005261.1 + 8118 0.67 0.607882
Target:  5'- gGCGGCucGCCAAGGcgcaguCGcUGGCGCGGa-- -3'
miRNA:   3'- -UGCUG--CGGUUCCu-----GC-ACCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 8940 0.79 0.136684
Target:  5'- -gGGCGCCGGGGGCG-GGCGgGGCg- -3'
miRNA:   3'- ugCUGCGGUUCCUGCaCCGCgCCGag -5'
23579 5' -60.4 NC_005261.1 + 9495 0.71 0.410503
Target:  5'- gACGAUGCCGAcagcuacggcGGGCG-GGCGgGGCcCg -3'
miRNA:   3'- -UGCUGCGGUU----------CCUGCaCCGCgCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 10652 0.71 0.41904
Target:  5'- -aGACGCCcAGGGCGcccUGGUGCGGg-- -3'
miRNA:   3'- ugCUGCGGuUCCUGC---ACCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 11068 0.66 0.667908
Target:  5'- gGCGcCGCCAgcgcgucuaGGGACGggacGGgGCGGgaCg -3'
miRNA:   3'- -UGCuGCGGU---------UCCUGCa---CCgCGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 11090 0.68 0.578004
Target:  5'- cGCGuCGUCucuGGGGCGggcgGGCGCGcGCa- -3'
miRNA:   3'- -UGCuGCGGu--UCCUGCa---CCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 11473 0.69 0.509847
Target:  5'- -gGGCGCgGAGgGGCGgggcgggGGUGCcGGCUCg -3'
miRNA:   3'- ugCUGCGgUUC-CUGCa------CCGCG-CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 11698 0.77 0.16292
Target:  5'- cGCGugGCCGAGGcGCGgcgGGCGCgGGCg- -3'
miRNA:   3'- -UGCugCGGUUCC-UGCa--CCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 11756 0.73 0.303004
Target:  5'- gGCGGCGCgguacuaccgCGAGGcgagcGCGcUGGCGCGGCUg -3'
miRNA:   3'- -UGCUGCG----------GUUCC-----UGC-ACCGCGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 11952 0.69 0.500368
Target:  5'- cACGGCGUCGuggcgcuggAGGACGcuucuUGGaCGCGGCg- -3'
miRNA:   3'- -UGCUGCGGU---------UCCUGC-----ACC-GCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 12077 0.73 0.296213
Target:  5'- aGCGGCGuCCGcgccGGGGCGgcucaaaGGCGCGGCg- -3'
miRNA:   3'- -UGCUGC-GGU----UCCUGCa------CCGCGCCGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.