miRNA display CGI

Results 61 - 80 of 733 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23580	3'	-65.7	NC_005261.1	+	39447	0.66	0.46278
	Target:  5'- aGGGCcccgagccuccGCGcGGCGCGGCGccccaacggGCCCgcCGCGg -3' miRNA:   3'- -UCCGu----------CGC-CCGCGCCGC---------UGGGa-GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	101270	0.66	0.46278
	Target:  5'- cGaGCucuGCGccGCGCGGCGGgCCUUGCGc -3' miRNA:   3'- uC-CGu--CGCc-CGCGCCGCUgGGAGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	35191	0.66	0.44533
	Target:  5'- cAGGCGcUGGGCcCuGCGGCCCgCGCGu -3' miRNA:   3'- -UCCGUcGCCCGcGcCGCUGGGaGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	134488	0.66	0.44533
	Target:  5'- gAGGCGGCGcGGUGCGcCG-CCggCGCGu -3' miRNA:   3'- -UCCGUCGC-CCGCGCcGCuGGgaGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	75789	0.66	0.428253
	Target:  5'- -cGCuGCugGGGCcCGGCGACCggCUCGCGc -3' miRNA:   3'- ucCGuCG--CCCGcGCCGCUGG--GAGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	98003	0.66	0.454009
	Target:  5'- gAGGCGGCggGGGCGCuGGCGGCgaggCUggagacgcCGCGg -3' miRNA:   3'- -UCCGUCG--CCCGCG-CCGCUGg---GA--------GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	133718	0.66	0.44533
	Target:  5'- cGGCGcccgcGCgGGGCGCGacuGgGGCCCgCGCAg -3' miRNA:   3'- uCCGU-----CG-CCCGCGC---CgCUGGGaGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	31533	0.66	0.46278
	Target:  5'- -uGCAGCgcuGGGaCGCGaucggcGCGGCCCUCGg- -3' miRNA:   3'- ucCGUCG---CCC-GCGC------CGCUGGGAGCgu -5'
23580	3'	-65.7	NC_005261.1	+	38181	0.66	0.436743
	Target:  5'- cGGCGGCGGcGCGCucgaGCuGACgCC-CGCGg -3' miRNA:   3'- uCCGUCGCC-CGCGc---CG-CUG-GGaGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	5129	0.66	0.411569
	Target:  5'- aAGGCcGCGcGGuUGaCGGCGGCCUUgCGCu -3' miRNA:   3'- -UCCGuCGC-CC-GC-GCCGCUGGGA-GCGu -5'
23580	3'	-65.7	NC_005261.1	+	32022	0.66	0.411569
	Target:  5'- cGGCcGCGGGCGCuuuuguuuaaacGGCG-CCacgCGCGc -3' miRNA:   3'- uCCGuCGCCCGCG------------CCGCuGGga-GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	61231	0.66	0.46278
	Target:  5'- aGGGCGGCGcgcgcGCGCGGCGAgagCCg-GCGg -3' miRNA:   3'- -UCCGUCGCc----CGCGCCGCUg--GGagCGU- -5'
23580	3'	-65.7	NC_005261.1	+	4128	0.66	0.411569
	Target:  5'- cGGCGGCGaGcGCGCgccGGCGcGCCgagagCUCGCAc -3' miRNA:   3'- uCCGUCGC-C-CGCG---CCGC-UGG-----GAGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	28669	0.66	0.409102
	Target:  5'- cGGCAGCggcgagggGGGcCGCGGCGguuguggcgaggggGCCCgcggcgggcgCGCAa -3' miRNA:   3'- uCCGUCG--------CCC-GCGCCGC--------------UGGGa---------GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	34484	0.66	0.460139
	Target:  5'- -uGCGGCGGGUGCuggagugggucgagGGCGcucuggugggcACCUUCGCc -3' miRNA:   3'- ucCGUCGCCCGCG--------------CCGC-----------UGGGAGCGu -5'
23580	3'	-65.7	NC_005261.1	+	75047	0.66	0.436743
	Target:  5'- cGGaGGUGGGCGCgGGCGugUCgcggaGCAc -3' miRNA:   3'- uCCgUCGCCCGCG-CCGCugGGag---CGU- -5'
23580	3'	-65.7	NC_005261.1	+	65355	0.66	0.44533
	Target:  5'- cGGCGGCGGG-GCGG--ACCUgccCGCGg -3' miRNA:   3'- uCCGUCGCCCgCGCCgcUGGGa--GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	17129	0.66	0.46278
	Target:  5'- cGGCGGCGGGUacGcCGGCGGgUCgaCGUAg -3' miRNA:   3'- uCCGUCGCCCG--C-GCCGCUgGGa-GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	18668	0.66	0.461899
	Target:  5'- cGGGCcccAGCGGGCGaaGgGGCCCcaggcugUUGCGg -3' miRNA:   3'- -UCCG---UCGCCCGCgcCgCUGGG-------AGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	127506	0.66	0.454009
	Target:  5'- gAGGCGGCggaggaagagGGGgGCccggaGGCGGCCCgcgaaCGCc -3' miRNA:   3'- -UCCGUCG----------CCCgCG-----CCGCUGGGa----GCGu -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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