miRNA display CGI


Results 61 - 80 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 134488 0.66 0.44533
Target:  5'- gAGGCGGCGcGGUGCGcCG-CCggCGCGu -3'
miRNA:   3'- -UCCGUCGC-CCGCGCcGCuGGgaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 117892 0.66 0.44533
Target:  5'- cGGCAgccGCGGGCgucgcucgugcGCGGCucggGGCCCagUCGCc -3'
miRNA:   3'- uCCGU---CGCCCG-----------CGCCG----CUGGG--AGCGu -5'
23580 3' -65.7 NC_005261.1 + 29632 0.66 0.44533
Target:  5'- gAGGCGcuggugcccGUGGGCGaGGCcaacGCCUUCGCGc -3'
miRNA:   3'- -UCCGU---------CGCCCGCgCCGc---UGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 117349 0.66 0.44533
Target:  5'- uGGCGGCcacgagcuGGCGaUGGcCGGCCCgcggCGCAa -3'
miRNA:   3'- uCCGUCGc-------CCGC-GCC-GCUGGGa---GCGU- -5'
23580 3' -65.7 NC_005261.1 + 81194 0.66 0.444467
Target:  5'- gGGGCAcggccgcGCGGGCGCGaGCcgGACCaccguggCGCc -3'
miRNA:   3'- -UCCGU-------CGCCCGCGC-CG--CUGGga-----GCGu -5'
23580 3' -65.7 NC_005261.1 + 58361 0.66 0.440166
Target:  5'- uGGGCcgaGGCGGccaagcucaaccccaGCGCGGCGGCUagCGCu -3'
miRNA:   3'- -UCCG---UCGCC---------------CGCGCCGCUGGgaGCGu -5'
23580 3' -65.7 NC_005261.1 + 90387 0.66 0.436743
Target:  5'- gAGGCcccgccGGCGGG-GCuGGCG-CCCggCGCGg -3'
miRNA:   3'- -UCCG------UCGCCCgCG-CCGCuGGGa-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 111591 0.66 0.436743
Target:  5'- gAGGCcgagcacgcggAGUGGGCGCGGCuGGgCUgcggCGCc -3'
miRNA:   3'- -UCCG-----------UCGCCCGCGCCG-CUgGGa---GCGu -5'
23580 3' -65.7 NC_005261.1 + 3372 0.66 0.436743
Target:  5'- aGGGCcGCGaGCGCGGCcGCCagcCGCGc -3'
miRNA:   3'- -UCCGuCGCcCGCGCCGcUGGga-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 5123 0.66 0.436743
Target:  5'- cGGC-GCGGGCGgccCGcCGGCgCUCGCGc -3'
miRNA:   3'- uCCGuCGCCCGC---GCcGCUGgGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 131966 0.66 0.436743
Target:  5'- cGGGUggAGCugccGCGCGGCcaccaGGCCUUCGCAg -3'
miRNA:   3'- -UCCG--UCGcc--CGCGCCG-----CUGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 107889 0.66 0.436743
Target:  5'- aGGGCcGCGaGCGCGGCcGCCagcCGCGc -3'
miRNA:   3'- -UCCGuCGCcCGCGCCGcUGGga-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 49747 0.66 0.436743
Target:  5'- gAGcGCGGCGcgcuccGGCGCGGCacGGCCCgcccacaCGCu -3'
miRNA:   3'- -UC-CGUCGC------CCGCGCCG--CUGGGa------GCGu -5'
23580 3' -65.7 NC_005261.1 + 38181 0.66 0.436743
Target:  5'- cGGCGGCGGcGCGCucgaGCuGACgCC-CGCGg -3'
miRNA:   3'- uCCGUCGCC-CGCGc---CG-CUG-GGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 109641 0.66 0.436743
Target:  5'- cGGC-GCGGGCGgccCGcCGGCgCUCGCGc -3'
miRNA:   3'- uCCGuCGCCCGC---GCcGCUGgGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 75047 0.66 0.436743
Target:  5'- cGGaGGUGGGCGCgGGCGugUCgcggaGCAc -3'
miRNA:   3'- uCCgUCGCCCGCG-CCGCugGGag---CGU- -5'
23580 3' -65.7 NC_005261.1 + 56008 0.66 0.43589
Target:  5'- cGGgGGCGGGgGCGGgGaagacgcaaucgcGCCCgugacgCGCGc -3'
miRNA:   3'- uCCgUCGCCCgCGCCgC-------------UGGGa-----GCGU- -5'
23580 3' -65.7 NC_005261.1 + 64889 0.66 0.43589
Target:  5'- cGGCGcCGGGCGgagacgaCGucGUGACCCUCGUg -3'
miRNA:   3'- uCCGUcGCCCGC-------GC--CGCUGGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 88213 0.66 0.428253
Target:  5'- cGGCGGCuGGGCGCccgcgcgcuGGCGGCgcggCUCGgGg -3'
miRNA:   3'- uCCGUCG-CCCGCG---------CCGCUGg---GAGCgU- -5'
23580 3' -65.7 NC_005261.1 + 16818 0.66 0.428253
Target:  5'- -cGUAGCGGcG-GCGGCaGCCgUCGCAc -3'
miRNA:   3'- ucCGUCGCC-CgCGCCGcUGGgAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.