miRNA display CGI


Results 41 - 60 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 105907 0.66 0.454009
Target:  5'- cGGGC-GCGGGCcgcucGCGcGCGcccacgccgcGCCCUcCGCGa -3'
miRNA:   3'- -UCCGuCGCCCG-----CGC-CGC----------UGGGA-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 22988 0.66 0.454009
Target:  5'- gAGGCGGCggaggaagagGGGgGCccggaGGCGGCCCgcgaaCGCc -3'
miRNA:   3'- -UCCGUCG----------CCCgCG-----CCGCUGGGa----GCGu -5'
23580 3' -65.7 NC_005261.1 + 127506 0.66 0.454009
Target:  5'- gAGGCGGCggaggaagagGGGgGCccggaGGCGGCCCgcgaaCGCc -3'
miRNA:   3'- -UCCGUCG----------CCCgCG-----CCGCUGGGa----GCGu -5'
23580 3' -65.7 NC_005261.1 + 15274 0.66 0.453137
Target:  5'- cGGCGGCgccgccgGGGCGCGcggucGCGGCCUccgggUCGUc -3'
miRNA:   3'- uCCGUCG-------CCCGCGC-----CGCUGGG-----AGCGu -5'
23580 3' -65.7 NC_005261.1 + 97371 0.66 0.453137
Target:  5'- cGGCc-CGGGCGUGucgccgcGCGGCUUUCGCGc -3'
miRNA:   3'- uCCGucGCCCGCGC-------CGCUGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 70669 0.66 0.44879
Target:  5'- cGGCcGCGGGCcgcaccuccagccagGCGuccagcGCGGCCCgCGCGg -3'
miRNA:   3'- uCCGuCGCCCG---------------CGC------CGCUGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 27363 0.66 0.44533
Target:  5'- gGGGCAGCGGuaggccGCGCGGC--UgUUCGCc -3'
miRNA:   3'- -UCCGUCGCC------CGCGCCGcuGgGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 11102 0.66 0.44533
Target:  5'- gGGGCgGGCGGGCGCGcGC-AUaaaaaUCGCGg -3'
miRNA:   3'- -UCCG-UCGCCCGCGC-CGcUGgg---AGCGU- -5'
23580 3' -65.7 NC_005261.1 + 35191 0.66 0.44533
Target:  5'- cAGGCGcUGGGCcCuGCGGCCCgCGCGu -3'
miRNA:   3'- -UCCGUcGCCCGcGcCGCUGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 117349 0.66 0.44533
Target:  5'- uGGCGGCcacgagcuGGCGaUGGcCGGCCCgcggCGCAa -3'
miRNA:   3'- uCCGUCGc-------CCGC-GCC-GCUGGGa---GCGU- -5'
23580 3' -65.7 NC_005261.1 + 70333 0.66 0.44533
Target:  5'- cGGGCGcCGGGUuaaauGCGGCGcuuACCCgCGCc -3'
miRNA:   3'- -UCCGUcGCCCG-----CGCCGC---UGGGaGCGu -5'
23580 3' -65.7 NC_005261.1 + 45916 0.66 0.44533
Target:  5'- uGGGCcgcGCGGaccGCGCGGCGcucAUCCUgGCc -3'
miRNA:   3'- -UCCGu--CGCC---CGCGCCGC---UGGGAgCGu -5'
23580 3' -65.7 NC_005261.1 + 75470 0.66 0.44533
Target:  5'- cAGGCGcCGGGCgGCGGCGcggGCCgCUacgaGCGc -3'
miRNA:   3'- -UCCGUcGCCCG-CGCCGC---UGG-GAg---CGU- -5'
23580 3' -65.7 NC_005261.1 + 16095 0.66 0.44533
Target:  5'- -cGCGGCGGcaccgGCGGCGGCCa-CGCAc -3'
miRNA:   3'- ucCGUCGCCcg---CGCCGCUGGgaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 65355 0.66 0.44533
Target:  5'- cGGCGGCGGG-GCGG--ACCUgccCGCGg -3'
miRNA:   3'- uCCGUCGCCCgCGCCgcUGGGa--GCGU- -5'
23580 3' -65.7 NC_005261.1 + 29632 0.66 0.44533
Target:  5'- gAGGCGcuggugcccGUGGGCGaGGCcaacGCCUUCGCGc -3'
miRNA:   3'- -UCCGU---------CGCCCGCgCCGc---UGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 37228 0.66 0.44533
Target:  5'- cGGGCuuGCGcGGCGCGGCG-CgUggacagCGCGg -3'
miRNA:   3'- -UCCGu-CGC-CCGCGCCGCuGgGa-----GCGU- -5'
23580 3' -65.7 NC_005261.1 + 133718 0.66 0.44533
Target:  5'- cGGCGcccgcGCgGGGCGCGacuGgGGCCCgCGCAg -3'
miRNA:   3'- uCCGU-----CG-CCCGCGC---CgCUGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 117892 0.66 0.44533
Target:  5'- cGGCAgccGCGGGCgucgcucgugcGCGGCucggGGCCCagUCGCc -3'
miRNA:   3'- uCCGU---CGCCCG-----------CGCCG----CUGGG--AGCGu -5'
23580 3' -65.7 NC_005261.1 + 134488 0.66 0.44533
Target:  5'- gAGGCGGCGcGGUGCGcCG-CCggCGCGu -3'
miRNA:   3'- -UCCGUCGC-CCGCGCcGCuGGgaGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.