miRNA display CGI


Results 21 - 40 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 53223 0.66 0.461899
Target:  5'- cGGUcugGGUGGGaUGCGGCGccagcucGCCCcgCGCGu -3'
miRNA:   3'- uCCG---UCGCCC-GCGCCGC-------UGGGa-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 133388 0.66 0.460139
Target:  5'- cGGCccaCGGGCGC-GCGGCCCaaaacaaggcccgcUCGCu -3'
miRNA:   3'- uCCGuc-GCCCGCGcCGCUGGG--------------AGCGu -5'
23580 3' -65.7 NC_005261.1 + 34484 0.66 0.460139
Target:  5'- -uGCGGCGGGUGCuggagugggucgagGGCGcucuggugggcACCUUCGCc -3'
miRNA:   3'- ucCGUCGCCCGCG--------------CCGC-----------UGGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 2839 0.66 0.459261
Target:  5'- gAGGUcGCGGccguggaccaugaGCgucucccaggugacGCGGCGGCCCUCGgGg -3'
miRNA:   3'- -UCCGuCGCC-------------CG--------------CGCCGCUGGGAGCgU- -5'
23580 3' -65.7 NC_005261.1 + 31277 0.66 0.457507
Target:  5'- gAGGCGGagcgcgccCGGGCcgaggugcgcgugucGCuGGCGGCCCU-GCAg -3'
miRNA:   3'- -UCCGUC--------GCCCG---------------CG-CCGCUGGGAgCGU- -5'
23580 3' -65.7 NC_005261.1 + 3364 0.66 0.457507
Target:  5'- gGGGCccgcGgGGGCGCgGGCGccuuguccccguccUCCUCGCAg -3'
miRNA:   3'- -UCCGu---CgCCCGCG-CCGCu-------------GGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 133097 0.66 0.454009
Target:  5'- gAGGCGcGCGaGCGcCGGCGGgCCgccCGCGc -3'
miRNA:   3'- -UCCGU-CGCcCGC-GCCGCUgGGa--GCGU- -5'
23580 3' -65.7 NC_005261.1 + 131929 0.66 0.454009
Target:  5'- uGGCGcgcGCGGGacCGCGGUG-CCCgCGCc -3'
miRNA:   3'- uCCGU---CGCCC--GCGCCGCuGGGaGCGu -5'
23580 3' -65.7 NC_005261.1 + 43299 0.66 0.454009
Target:  5'- -cGCGGgGGGCGcCGGCaGCCCggccagcuUCGCc -3'
miRNA:   3'- ucCGUCgCCCGC-GCCGcUGGG--------AGCGu -5'
23580 3' -65.7 NC_005261.1 + 29300 0.66 0.454009
Target:  5'- cGGCGugcGUGGGCGUgcugGGCcccGACCC-CGCGc -3'
miRNA:   3'- uCCGU---CGCCCGCG----CCG---CUGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 59582 0.66 0.454009
Target:  5'- -cGCAGCGGGUGCcGCGccgccaccACCUcCGCGg -3'
miRNA:   3'- ucCGUCGCCCGCGcCGC--------UGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 12167 0.66 0.454009
Target:  5'- gAGGcCGGCGGGCGgcUGGCG-CCggagcgggagcaCUCGUAc -3'
miRNA:   3'- -UCC-GUCGCCCGC--GCCGCuGG------------GAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 34882 0.66 0.454009
Target:  5'- gGGGgAGCGGcGCGCGGagcuguacCGGCgCCUggaCGCGc -3'
miRNA:   3'- -UCCgUCGCC-CGCGCC--------GCUG-GGA---GCGU- -5'
23580 3' -65.7 NC_005261.1 + 28069 0.66 0.454009
Target:  5'- cGGGgGGCGcGGUgGCGGCGGCCa-UGCc -3'
miRNA:   3'- -UCCgUCGC-CCG-CGCCGCUGGgaGCGu -5'
23580 3' -65.7 NC_005261.1 + 30322 0.66 0.454009
Target:  5'- cGGCGGaagugccGGCGCGGCuggcGGCCgcgCUCGCGg -3'
miRNA:   3'- uCCGUCgc-----CCGCGCCG----CUGG---GAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 127506 0.66 0.454009
Target:  5'- gAGGCGGCggaggaagagGGGgGCccggaGGCGGCCCgcgaaCGCc -3'
miRNA:   3'- -UCCGUCG----------CCCgCG-----CCGCUGGGa----GCGu -5'
23580 3' -65.7 NC_005261.1 + 98003 0.66 0.454009
Target:  5'- gAGGCGGCggGGGCGCuGGCGGCgaggCUggagacgcCGCGg -3'
miRNA:   3'- -UCCGUCG--CCCGCG-CCGCUGg---GA--------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 105907 0.66 0.454009
Target:  5'- cGGGC-GCGGGCcgcucGCGcGCGcccacgccgcGCCCUcCGCGa -3'
miRNA:   3'- -UCCGuCGCCCG-----CGC-CGC----------UGGGA-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 28580 0.66 0.454009
Target:  5'- gAGGCGcGCGaGCGcCGGCGGgCCgccCGCGc -3'
miRNA:   3'- -UCCGU-CGCcCGC-GCCGCUgGGa--GCGU- -5'
23580 3' -65.7 NC_005261.1 + 134839 0.66 0.454009
Target:  5'- cGGCGGaagugccGGCGCGGCuggcGGCCgcgCUCGCGg -3'
miRNA:   3'- uCCGUCgc-----CCGCGCCG----CUGG---GAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.