miRNA display CGI


Results 21 - 40 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 3364 0.66 0.457507
Target:  5'- gGGGCccgcGgGGGCGCgGGCGccuuguccccguccUCCUCGCAg -3'
miRNA:   3'- -UCCGu---CgCCCGCG-CCGCu-------------GGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 3372 0.66 0.436743
Target:  5'- aGGGCcGCGaGCGCGGCcGCCagcCGCGc -3'
miRNA:   3'- -UCCGuCGCcCGCGCCGcUGGga-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 3432 0.67 0.387314
Target:  5'- cGGGCcagcguccaGGCGGGCGC-GCGGgCCgccgCGCc -3'
miRNA:   3'- -UCCG---------UCGCCCGCGcCGCUgGGa---GCGu -5'
23580 3' -65.7 NC_005261.1 + 3551 0.76 0.090883
Target:  5'- cAGcGCGGCGGGCGCGGCG-CCgCUaaggCGCGc -3'
miRNA:   3'- -UC-CGUCGCCCGCGCCGCuGG-GA----GCGU- -5'
23580 3' -65.7 NC_005261.1 + 3848 0.69 0.300118
Target:  5'- cGGCAGCGGcGC-CGGCG-CCg-CGCGg -3'
miRNA:   3'- uCCGUCGCC-CGcGCCGCuGGgaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 3895 0.7 0.239684
Target:  5'- cGGCgAGCGcGGCGCgGGCG-CCCgCGCc -3'
miRNA:   3'- uCCG-UCGC-CCGCG-CCGCuGGGaGCGu -5'
23580 3' -65.7 NC_005261.1 + 4128 0.66 0.411569
Target:  5'- cGGCGGCGaGcGCGCgccGGCGcGCCgagagCUCGCAc -3'
miRNA:   3'- uCCGUCGC-C-CGCG---CCGC-UGG-----GAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 4293 0.67 0.374769
Target:  5'- cGGCcGCGGGCcccGCGGCcgccgcguagcgcgcGGCcgCCUCGCGg -3'
miRNA:   3'- uCCGuCGCCCG---CGCCG---------------CUG--GGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 4405 0.68 0.341712
Target:  5'- cGGCGGCGGcGCGCuGCcgGGCCaggcCUCGCc -3'
miRNA:   3'- uCCGUCGCC-CGCGcCG--CUGG----GAGCGu -5'
23580 3' -65.7 NC_005261.1 + 4448 0.81 0.042227
Target:  5'- -aGCAGCGGGCccuccagcgGCGGCGGCCCgUCGCGc -3'
miRNA:   3'- ucCGUCGCCCG---------CGCCGCUGGG-AGCGU- -5'
23580 3' -65.7 NC_005261.1 + 4598 0.67 0.379441
Target:  5'- -cGCAGC-GGCGCGGCGagcgcgGCCCacagCGCc -3'
miRNA:   3'- ucCGUCGcCCGCGCCGC------UGGGa---GCGu -5'
23580 3' -65.7 NC_005261.1 + 4665 0.71 0.228889
Target:  5'- cGGCcGCGGcG-GCGGCGGCCCcCGUg -3'
miRNA:   3'- uCCGuCGCC-CgCGCCGCUGGGaGCGu -5'
23580 3' -65.7 NC_005261.1 + 4891 0.69 0.280834
Target:  5'- cGGCAGCGccGCGCGcGCGugCCg-GCAg -3'
miRNA:   3'- uCCGUCGCc-CGCGC-CGCugGGagCGU- -5'
23580 3' -65.7 NC_005261.1 + 4948 0.74 0.135311
Target:  5'- cGGCcacgaGGCGGGCGcCGGCG-CCCUgGUAc -3'
miRNA:   3'- uCCG-----UCGCCCGC-GCCGCuGGGAgCGU- -5'
23580 3' -65.7 NC_005261.1 + 5123 0.66 0.436743
Target:  5'- cGGC-GCGGGCGgccCGcCGGCgCUCGCGc -3'
miRNA:   3'- uCCGuCGCCCGC---GCcGCUGgGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 5129 0.66 0.411569
Target:  5'- aAGGCcGCGcGGuUGaCGGCGGCCUUgCGCu -3'
miRNA:   3'- -UCCGuCGC-CC-GC-GCCGCUGGGA-GCGu -5'
23580 3' -65.7 NC_005261.1 + 5254 0.69 0.292931
Target:  5'- cGGGUcGCGGuGCGCGGCGACgaaggcggccacgUCggCGCAg -3'
miRNA:   3'- -UCCGuCGCC-CGCGCCGCUG-------------GGa-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 5648 0.74 0.138668
Target:  5'- cGGGCGuccGCGGGCGCGcCGACguCUUCGCAg -3'
miRNA:   3'- -UCCGU---CGCCCGCGCcGCUG--GGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 5820 0.67 0.37866
Target:  5'- aGGGguGCGcgggccaGGCGuCGGCGGCggCCUCGgGg -3'
miRNA:   3'- -UCCguCGC-------CCGC-GCCGCUG--GGAGCgU- -5'
23580 3' -65.7 NC_005261.1 + 6027 0.68 0.32041
Target:  5'- uGGC-GCGGGCG-GGCccgGACCCaaGCAa -3'
miRNA:   3'- uCCGuCGCCCGCgCCG---CUGGGagCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.