miRNA display CGI


Results 1 - 20 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 15 0.67 0.371676
Target:  5'- cGuGCAGCGGGCccCGcGCGACCC-CGgGg -3'
miRNA:   3'- uC-CGUCGCCCGc-GC-CGCUGGGaGCgU- -5'
23580 3' -65.7 NC_005261.1 + 258 0.67 0.387314
Target:  5'- cGGCGGCGGcUGCGGCGGCggcUGCGg -3'
miRNA:   3'- uCCGUCGCCcGCGCCGCUGggaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 294 0.67 0.387314
Target:  5'- cGGCGGCGGcUGCGGCGGCggcUGCGg -3'
miRNA:   3'- uCCGUCGCCcGCGCCGCUGggaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 330 0.78 0.063712
Target:  5'- cGGCGGCGGcUGCGGCGGCCCgcagcccggCGCGg -3'
miRNA:   3'- uCCGUCGCCcGCGCCGCUGGGa--------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 388 0.67 0.36402
Target:  5'- cGGCGGCGgcGGCgGCGGCGGCagcgguccugguCC-CGCGa -3'
miRNA:   3'- uCCGUCGC--CCG-CGCCGCUG------------GGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 449 0.72 0.180938
Target:  5'- cGGGCGGCGGGgcccgGgGGCGcGCCC-CGCAc -3'
miRNA:   3'- -UCCGUCGCCCg----CgCCGC-UGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 522 0.69 0.285244
Target:  5'- aGGGCgcgGGCGGGCGgggggcagggcggaCGGCGGCUCggccgccgCGCGg -3'
miRNA:   3'- -UCCG---UCGCCCGC--------------GCCGCUGGGa-------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 1013 0.69 0.293578
Target:  5'- gGGGCGGgGGGCG-GGUGgGCUUUUGCGg -3'
miRNA:   3'- -UCCGUCgCCCGCgCCGC-UGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 1041 0.74 0.128819
Target:  5'- aGGGCGGCGGGCggcggcguuaGCGGCGcggggggcugGCCC-CGCu -3'
miRNA:   3'- -UCCGUCGCCCG----------CGCCGC----------UGGGaGCGu -5'
23580 3' -65.7 NC_005261.1 + 1191 0.72 0.172484
Target:  5'- gGGGCcggGGcCGGGCGCGGCGcggACCCccCGCc -3'
miRNA:   3'- -UCCG---UC-GCCCGCGCCGC---UGGGa-GCGu -5'
23580 3' -65.7 NC_005261.1 + 1416 0.78 0.06878
Target:  5'- cGGCGGCGGGgGCGGCG-CCCgccuccaGCAc -3'
miRNA:   3'- uCCGUCGCCCgCGCCGCuGGGag-----CGU- -5'
23580 3' -65.7 NC_005261.1 + 1592 0.66 0.46278
Target:  5'- cGGuUGGC-GGCGCGGUGGCuggccgCCUCGCc -3'
miRNA:   3'- uCC-GUCGcCCGCGCCGCUG------GGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 1731 0.68 0.349037
Target:  5'- cGGGCAccGCGGuGCGCGG--GCCCaggCGCGu -3'
miRNA:   3'- -UCCGU--CGCC-CGCGCCgcUGGGa--GCGU- -5'
23580 3' -65.7 NC_005261.1 + 2396 0.68 0.32041
Target:  5'- uGGCGGCGaGCGCGcccGCgGGCCCcgCGCGg -3'
miRNA:   3'- uCCGUCGCcCGCGC---CG-CUGGGa-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 2425 0.67 0.395295
Target:  5'- nGGCGGCGGGcCGCGaucuCGGCCagCGCc -3'
miRNA:   3'- uCCGUCGCCC-GCGCc---GCUGGgaGCGu -5'
23580 3' -65.7 NC_005261.1 + 2637 0.75 0.116691
Target:  5'- gGGGCccagcacgcgGGCGGGCaGCGGCGGCUCcCGCc -3'
miRNA:   3'- -UCCG----------UCGCCCG-CGCCGCUGGGaGCGu -5'
23580 3' -65.7 NC_005261.1 + 2749 0.74 0.128819
Target:  5'- -cGCGGCGGGCcgucGCGGCGGgCCUCGa- -3'
miRNA:   3'- ucCGUCGCCCG----CGCCGCUgGGAGCgu -5'
23580 3' -65.7 NC_005261.1 + 2839 0.66 0.459261
Target:  5'- gAGGUcGCGGccguggaccaugaGCgucucccaggugacGCGGCGGCCCUCGgGg -3'
miRNA:   3'- -UCCGuCGCC-------------CG--------------CGCCGCUGGGAGCgU- -5'
23580 3' -65.7 NC_005261.1 + 2839 0.77 0.080105
Target:  5'- cGGGCGGCaGGGC-CGGCGGCCCccUCGUc -3'
miRNA:   3'- -UCCGUCG-CCCGcGCCGCUGGG--AGCGu -5'
23580 3' -65.7 NC_005261.1 + 3005 0.67 0.395295
Target:  5'- cGGCGGCGacGCGCucGGCcguGGCCCUCuGCGc -3'
miRNA:   3'- uCCGUCGCc-CGCG--CCG---CUGGGAG-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.