miRNA display CGI

Results 1 - 20 of 733 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23580	3'	-65.7	NC_005261.1	+	15	0.67	0.371676
	Target:  5'- cGuGCAGCGGGCccCGcGCGACCC-CGgGg -3' miRNA:   3'- uC-CGUCGCCCGc-GC-CGCUGGGaGCgU- -5'
23580	3'	-65.7	NC_005261.1	+	258	0.67	0.387314
	Target:  5'- cGGCGGCGGcUGCGGCGGCggcUGCGg -3' miRNA:   3'- uCCGUCGCCcGCGCCGCUGggaGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	294	0.67	0.387314
	Target:  5'- cGGCGGCGGcUGCGGCGGCggcUGCGg -3' miRNA:   3'- uCCGUCGCCcGCGCCGCUGggaGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	330	0.78	0.063712
	Target:  5'- cGGCGGCGGcUGCGGCGGCCCgcagcccggCGCGg -3' miRNA:   3'- uCCGUCGCCcGCGCCGCUGGGa--------GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	388	0.67	0.36402
	Target:  5'- cGGCGGCGgcGGCgGCGGCGGCagcgguccugguCC-CGCGa -3' miRNA:   3'- uCCGUCGC--CCG-CGCCGCUG------------GGaGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	449	0.72	0.180938
	Target:  5'- cGGGCGGCGGGgcccgGgGGCGcGCCC-CGCAc -3' miRNA:   3'- -UCCGUCGCCCg----CgCCGC-UGGGaGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	522	0.69	0.285244
	Target:  5'- aGGGCgcgGGCGGGCGgggggcagggcggaCGGCGGCUCggccgccgCGCGg -3' miRNA:   3'- -UCCG---UCGCCCGC--------------GCCGCUGGGa-------GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	1013	0.69	0.293578
	Target:  5'- gGGGCGGgGGGCG-GGUGgGCUUUUGCGg -3' miRNA:   3'- -UCCGUCgCCCGCgCCGC-UGGGAGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	1041	0.74	0.128819
	Target:  5'- aGGGCGGCGGGCggcggcguuaGCGGCGcggggggcugGCCC-CGCu -3' miRNA:   3'- -UCCGUCGCCCG----------CGCCGC----------UGGGaGCGu -5'
23580	3'	-65.7	NC_005261.1	+	1191	0.72	0.172484
	Target:  5'- gGGGCcggGGcCGGGCGCGGCGcggACCCccCGCc -3' miRNA:   3'- -UCCG---UC-GCCCGCGCCGC---UGGGa-GCGu -5'
23580	3'	-65.7	NC_005261.1	+	1416	0.78	0.06878
	Target:  5'- cGGCGGCGGGgGCGGCG-CCCgccuccaGCAc -3' miRNA:   3'- uCCGUCGCCCgCGCCGCuGGGag-----CGU- -5'
23580	3'	-65.7	NC_005261.1	+	1592	0.66	0.46278
	Target:  5'- cGGuUGGC-GGCGCGGUGGCuggccgCCUCGCc -3' miRNA:   3'- uCC-GUCGcCCGCGCCGCUG------GGAGCGu -5'
23580	3'	-65.7	NC_005261.1	+	1731	0.68	0.349037
	Target:  5'- cGGGCAccGCGGuGCGCGG--GCCCaggCGCGu -3' miRNA:   3'- -UCCGU--CGCC-CGCGCCgcUGGGa--GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	2396	0.68	0.32041
	Target:  5'- uGGCGGCGaGCGCGcccGCgGGCCCcgCGCGg -3' miRNA:   3'- uCCGUCGCcCGCGC---CG-CUGGGa-GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	2425	0.67	0.395295
	Target:  5'- nGGCGGCGGGcCGCGaucuCGGCCagCGCc -3' miRNA:   3'- uCCGUCGCCC-GCGCc---GCUGGgaGCGu -5'
23580	3'	-65.7	NC_005261.1	+	2637	0.75	0.116691
	Target:  5'- gGGGCccagcacgcgGGCGGGCaGCGGCGGCUCcCGCc -3' miRNA:   3'- -UCCG----------UCGCCCG-CGCCGCUGGGaGCGu -5'
23580	3'	-65.7	NC_005261.1	+	2749	0.74	0.128819
	Target:  5'- -cGCGGCGGGCcgucGCGGCGGgCCUCGa- -3' miRNA:   3'- ucCGUCGCCCG----CGCCGCUgGGAGCgu -5'
23580	3'	-65.7	NC_005261.1	+	2839	0.77	0.080105
	Target:  5'- cGGGCGGCaGGGC-CGGCGGCCCccUCGUc -3' miRNA:   3'- -UCCGUCG-CCCGcGCCGCUGGG--AGCGu -5'
23580	3'	-65.7	NC_005261.1	+	2839	0.66	0.459261
	Target:  5'- gAGGUcGCGGccguggaccaugaGCgucucccaggugacGCGGCGGCCCUCGgGg -3' miRNA:   3'- -UCCGuCGCC-------------CG--------------CGCCGCUGGGAGCgU- -5'
23580	3'	-65.7	NC_005261.1	+	3005	0.67	0.395295
	Target:  5'- cGGCGGCGacGCGCucGGCcguGGCCCUCuGCGc -3' miRNA:   3'- uCCGUCGCc-CGCG--CCG---CUGGGAG-CGU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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