miRNA display CGI


Results 1 - 20 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 80251 0.66 0.419861
Target:  5'- uGGCGGCGcGGcCGCGcGCG-CCUgcgUCGCc -3'
miRNA:   3'- uCCGUCGC-CC-GCGC-CGCuGGG---AGCGu -5'
23580 3' -65.7 NC_005261.1 + 135466 0.66 0.427409
Target:  5'- cGGgGGCGGGCcucgaggcccgccGCGaCGGCCCgccgcggCGCAa -3'
miRNA:   3'- uCCgUCGCCCG-------------CGCcGCUGGGa------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 21514 0.66 0.410746
Target:  5'- aGGGCGGCGacgucGGCcaGCuGGCGGCCgaugagcgaggcgCUCGCGa -3'
miRNA:   3'- -UCCGUCGC-----CCG--CG-CCGCUGG-------------GAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 5129 0.66 0.411569
Target:  5'- aAGGCcGCGcGGuUGaCGGCGGCCUUgCGCu -3'
miRNA:   3'- -UCCGuCGC-CC-GC-GCCGCUGGGA-GCGu -5'
23580 3' -65.7 NC_005261.1 + 37158 0.66 0.411569
Target:  5'- cGGCcGCGGGCGUGGUgcuggGGCUgcgCGCGg -3'
miRNA:   3'- uCCGuCGCCCGCGCCG-----CUGGga-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 119611 0.66 0.411569
Target:  5'- uGGCcucGCGgauuucGGCGCGcGCGACggacaCCUCGCAc -3'
miRNA:   3'- uCCGu--CGC------CCGCGC-CGCUG-----GGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 32022 0.66 0.411569
Target:  5'- cGGCcGCGGGCGCuuuuguuuaaacGGCG-CCacgCGCGc -3'
miRNA:   3'- uCCGuCGCCCGCG------------CCGCuGGga-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 44313 0.66 0.419027
Target:  5'- cGGCGcaagcccGCGGGCGCcGCG-CCCgcagUCGCu -3'
miRNA:   3'- uCCGU-------CGCCCGCGcCGCuGGG----AGCGu -5'
23580 3' -65.7 NC_005261.1 + 32255 0.66 0.416532
Target:  5'- cGGGCGGCgucgacgccgcgcuGGGCGCcgaggccaucgacGGCG-CgCUCGCGg -3'
miRNA:   3'- -UCCGUCG--------------CCCGCG-------------CCGCuGgGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 132642 0.66 0.419861
Target:  5'- gGGGCcucgaGGCGGGCGCccucGGCGcCCCcaucucCGCc -3'
miRNA:   3'- -UCCG-----UCGCCCGCG----CCGCuGGGa-----GCGu -5'
23580 3' -65.7 NC_005261.1 + 51208 0.66 0.411569
Target:  5'- -cGCGGUGGcGCGCGG-GGCCg-CGCAc -3'
miRNA:   3'- ucCGUCGCC-CGCGCCgCUGGgaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 67010 0.66 0.411569
Target:  5'- aGGGCcGCGuGCGCGcGCGcACCaUCGCGc -3'
miRNA:   3'- -UCCGuCGCcCGCGC-CGC-UGGgAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 53329 0.66 0.411569
Target:  5'- cGGaGguGUGGGCG-GGC-ACCUUCGCc -3'
miRNA:   3'- -UC-CguCGCCCGCgCCGcUGGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 134328 0.66 0.419861
Target:  5'- cGGCGgcGCGGGCGCccGCGccGCgCUCGCc -3'
miRNA:   3'- uCCGU--CGCCCGCGc-CGC--UGgGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 28669 0.66 0.409102
Target:  5'- cGGCAGCggcgagggGGGcCGCGGCGguuguggcgaggggGCCCgcggcgggcgCGCAa -3'
miRNA:   3'- uCCGUCG--------CCC-GCGCCGC--------------UGGGa---------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 4128 0.66 0.411569
Target:  5'- cGGCGGCGaGcGCGCgccGGCGcGCCgagagCUCGCAc -3'
miRNA:   3'- uCCGUCGC-C-CGCG---CCGC-UGG-----GAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 14310 0.66 0.411569
Target:  5'- cGGGCGcGCaccugcucGGGCcgcaccccacaGCGGCGGCCUUcCGCGa -3'
miRNA:   3'- -UCCGU-CG--------CCCG-----------CGCCGCUGGGA-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 31477 0.66 0.419861
Target:  5'- cGGCaagcucguGGCGGGCGCGGaGGCgCCggggcUGCAc -3'
miRNA:   3'- uCCG--------UCGCCCGCGCCgCUG-GGa----GCGU- -5'
23580 3' -65.7 NC_005261.1 + 125496 0.66 0.411569
Target:  5'- cGGGCccgcccAGgGGGC-CGGCgGGCCCgCGCGc -3'
miRNA:   3'- -UCCG------UCgCCCGcGCCG-CUGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 55852 0.66 0.419861
Target:  5'- nGGGCuGgGcGGCGCuGGCGGCgCgcgCGCGc -3'
miRNA:   3'- -UCCGuCgC-CCGCG-CCGCUGgGa--GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.