Results 1 - 20 of 733 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23580 | 3' | -65.7 | NC_005261.1 | + | 113920 | 1.07 | 0.000472 |
Target: 5'- gAGGCAGCGGGCGCGGCGACCCUCGCAc -3' miRNA: 3'- -UCCGUCGCCCGCGCCGCUGGGAGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 118018 | 0.85 | 0.020386 |
Target: 5'- cAGGCAGCGGGCGCggggccuuuGGCGGCCC-CGCu -3' miRNA: 3'- -UCCGUCGCCCGCG---------CCGCUGGGaGCGu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 132624 | 0.84 | 0.024283 |
Target: 5'- gGGGCGcuggcgccgaggacGCGGGCGCGGCGGCCCUaGCGg -3' miRNA: 3'- -UCCGU--------------CGCCCGCGCCGCUGGGAgCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 21587 | 0.83 | 0.031752 |
Target: 5'- cGGCGGCGGGCGC-GCGGgCCUCGCc -3' miRNA: 3'- uCCGUCGCCCGCGcCGCUgGGAGCGu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 135654 | 0.82 | 0.035227 |
Target: 5'- -uGC-GCGGGCGCgGGCGGCCCUCGCu -3' miRNA: 3'- ucCGuCGCCCGCG-CCGCUGGGAGCGu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 38370 | 0.81 | 0.042227 |
Target: 5'- cGGCGGCGGcGCGCGGCGGCCggUGCc -3' miRNA: 3'- uCCGUCGCC-CGCGCCGCUGGgaGCGu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 108965 | 0.81 | 0.042227 |
Target: 5'- -aGCAGCGGGCccuccagcgGCGGCGGCCCgUCGCGc -3' miRNA: 3'- ucCGUCGCCCG---------CGCCGCUGGG-AGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 4448 | 0.81 | 0.042227 |
Target: 5'- -aGCAGCGGGCccuccagcgGCGGCGGCCCgUCGCGc -3' miRNA: 3'- ucCGUCGCCCG---------CGCCGCUGGG-AGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 125181 | 0.8 | 0.045628 |
Target: 5'- cGGCAG-GGGCGCGcGCGGCCC-CGCGc -3' miRNA: 3'- uCCGUCgCCCGCGC-CGCUGGGaGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 75974 | 0.8 | 0.053114 |
Target: 5'- -cGCAGCucuucccGGGCGCGGCcGCCCUCGCGc -3' miRNA: 3'- ucCGUCG-------CCCGCGCCGcUGGGAGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 6438 | 0.8 | 0.053251 |
Target: 5'- aGGcGCGGCGGGCGCGGCGucgggGCCCagcggCGCGc -3' miRNA: 3'- -UC-CGUCGCCCGCGCCGC-----UGGGa----GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 116591 | 0.79 | 0.060536 |
Target: 5'- cGGCAGCGgcguccgcgccGGgGCGGgGACCCUCGCc -3' miRNA: 3'- uCCGUCGC-----------CCgCGCCgCUGGGAGCGu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 31976 | 0.79 | 0.060536 |
Target: 5'- cGGCAGCGGcG-GCGGCGGCCCgguagggCGCGg -3' miRNA: 3'- uCCGUCGCC-CgCGCCGCUGGGa------GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 98630 | 0.79 | 0.060536 |
Target: 5'- gGGGCGGCGGGgGCGcGCGGCgCUCGg- -3' miRNA: 3'- -UCCGUCGCCCgCGC-CGCUGgGAGCgu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 62298 | 0.79 | 0.062104 |
Target: 5'- cGGCGccgcGCGGGCgcGCGGCGGCCC-CGCGg -3' miRNA: 3'- uCCGU----CGCCCG--CGCCGCUGGGaGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 330 | 0.78 | 0.063712 |
Target: 5'- cGGCGGCGGcUGCGGCGGCCCgcagcccggCGCGg -3' miRNA: 3'- uCCGUCGCCcGCGCCGCUGGGa--------GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 45617 | 0.78 | 0.063712 |
Target: 5'- cGGCGGCGcGGCGCGGCGcggcggGCCCgCGCc -3' miRNA: 3'- uCCGUCGC-CCGCGCCGC------UGGGaGCGu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 138001 | 0.78 | 0.063712 |
Target: 5'- cGGCGGCGGcUGCGGCGGCCCgcagcccggCGCGg -3' miRNA: 3'- uCCGUCGCCcGCGCCGCUGGGa--------GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 104847 | 0.78 | 0.063712 |
Target: 5'- cGGCGGCGGcUGCGGCGGCCCgcagcccggCGCGg -3' miRNA: 3'- uCCGUCGCCcGCGCCGCUGGGa--------GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 70865 | 0.78 | 0.063712 |
Target: 5'- cGGCGGUGGcGCuGcCGGCGGCCUUCGCGg -3' miRNA: 3'- uCCGUCGCC-CG-C-GCCGCUGGGAGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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