miRNA display CGI


Results 1 - 20 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 113920 1.07 0.000472
Target:  5'- gAGGCAGCGGGCGCGGCGACCCUCGCAc -3'
miRNA:   3'- -UCCGUCGCCCGCGCCGCUGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 118018 0.85 0.020386
Target:  5'- cAGGCAGCGGGCGCggggccuuuGGCGGCCC-CGCu -3'
miRNA:   3'- -UCCGUCGCCCGCG---------CCGCUGGGaGCGu -5'
23580 3' -65.7 NC_005261.1 + 132624 0.84 0.024283
Target:  5'- gGGGCGcuggcgccgaggacGCGGGCGCGGCGGCCCUaGCGg -3'
miRNA:   3'- -UCCGU--------------CGCCCGCGCCGCUGGGAgCGU- -5'
23580 3' -65.7 NC_005261.1 + 21587 0.83 0.031752
Target:  5'- cGGCGGCGGGCGC-GCGGgCCUCGCc -3'
miRNA:   3'- uCCGUCGCCCGCGcCGCUgGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 135654 0.82 0.035227
Target:  5'- -uGC-GCGGGCGCgGGCGGCCCUCGCu -3'
miRNA:   3'- ucCGuCGCCCGCG-CCGCUGGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 4448 0.81 0.042227
Target:  5'- -aGCAGCGGGCccuccagcgGCGGCGGCCCgUCGCGc -3'
miRNA:   3'- ucCGUCGCCCG---------CGCCGCUGGG-AGCGU- -5'
23580 3' -65.7 NC_005261.1 + 38370 0.81 0.042227
Target:  5'- cGGCGGCGGcGCGCGGCGGCCggUGCc -3'
miRNA:   3'- uCCGUCGCC-CGCGCCGCUGGgaGCGu -5'
23580 3' -65.7 NC_005261.1 + 108965 0.81 0.042227
Target:  5'- -aGCAGCGGGCccuccagcgGCGGCGGCCCgUCGCGc -3'
miRNA:   3'- ucCGUCGCCCG---------CGCCGCUGGG-AGCGU- -5'
23580 3' -65.7 NC_005261.1 + 125181 0.8 0.045628
Target:  5'- cGGCAG-GGGCGCGcGCGGCCC-CGCGc -3'
miRNA:   3'- uCCGUCgCCCGCGC-CGCUGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 75974 0.8 0.053114
Target:  5'- -cGCAGCucuucccGGGCGCGGCcGCCCUCGCGc -3'
miRNA:   3'- ucCGUCG-------CCCGCGCCGcUGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 6438 0.8 0.053251
Target:  5'- aGGcGCGGCGGGCGCGGCGucgggGCCCagcggCGCGc -3'
miRNA:   3'- -UC-CGUCGCCCGCGCCGC-----UGGGa----GCGU- -5'
23580 3' -65.7 NC_005261.1 + 116591 0.79 0.060536
Target:  5'- cGGCAGCGgcguccgcgccGGgGCGGgGACCCUCGCc -3'
miRNA:   3'- uCCGUCGC-----------CCgCGCCgCUGGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 98630 0.79 0.060536
Target:  5'- gGGGCGGCGGGgGCGcGCGGCgCUCGg- -3'
miRNA:   3'- -UCCGUCGCCCgCGC-CGCUGgGAGCgu -5'
23580 3' -65.7 NC_005261.1 + 31976 0.79 0.060536
Target:  5'- cGGCAGCGGcG-GCGGCGGCCCgguagggCGCGg -3'
miRNA:   3'- uCCGUCGCC-CgCGCCGCUGGGa------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 62298 0.79 0.062104
Target:  5'- cGGCGccgcGCGGGCgcGCGGCGGCCC-CGCGg -3'
miRNA:   3'- uCCGU----CGCCCG--CGCCGCUGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 138001 0.78 0.063712
Target:  5'- cGGCGGCGGcUGCGGCGGCCCgcagcccggCGCGg -3'
miRNA:   3'- uCCGUCGCCcGCGCCGCUGGGa--------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 330 0.78 0.063712
Target:  5'- cGGCGGCGGcUGCGGCGGCCCgcagcccggCGCGg -3'
miRNA:   3'- uCCGUCGCCcGCGCCGCUGGGa--------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 104847 0.78 0.063712
Target:  5'- cGGCGGCGGcUGCGGCGGCCCgcagcccggCGCGg -3'
miRNA:   3'- uCCGUCGCCcGCGCCGCUGGGa--------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 70865 0.78 0.063712
Target:  5'- cGGCGGUGGcGCuGcCGGCGGCCUUCGCGg -3'
miRNA:   3'- uCCGUCGCC-CG-C-GCCGCUGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 45617 0.78 0.063712
Target:  5'- cGGCGGCGcGGCGCGGCGcggcggGCCCgCGCc -3'
miRNA:   3'- uCCGUCGC-CCGCGCCGC------UGGGaGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.