miRNA display CGI


Results 1 - 20 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 69957 0.66 0.46278
Target:  5'- gGGGCcccgccgcGCGGGCGCaGGCG-CgCCagGCAg -3'
miRNA:   3'- -UCCGu-------CGCCCGCG-CCGCuG-GGagCGU- -5'
23580 3' -65.7 NC_005261.1 + 67630 0.66 0.46278
Target:  5'- gGGGCccucuucgGGCGGGCGCacgccGCuGCgCUCGCGc -3'
miRNA:   3'- -UCCG--------UCGCCCGCGc----CGcUGgGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 61231 0.66 0.46278
Target:  5'- aGGGCGGCGcgcgcGCGCGGCGAgagCCg-GCGg -3'
miRNA:   3'- -UCCGUCGCc----CGCGCCGCUg--GGagCGU- -5'
23580 3' -65.7 NC_005261.1 + 31437 0.66 0.46278
Target:  5'- cGGCGcugguGCGGGCGCaGaCGGCgCUgGCGc -3'
miRNA:   3'- uCCGU-----CGCCCGCGcC-GCUGgGAgCGU- -5'
23580 3' -65.7 NC_005261.1 + 84714 0.66 0.46278
Target:  5'- cGGCAGCcacagccuucGGGCGCGauaaCGAgcCCCUgGCGc -3'
miRNA:   3'- uCCGUCG----------CCCGCGCc---GCU--GGGAgCGU- -5'
23580 3' -65.7 NC_005261.1 + 72023 0.66 0.46278
Target:  5'- uGGGCGGCGugcuGGCGCuGGCcGACUCggagGCGg -3'
miRNA:   3'- -UCCGUCGC----CCGCG-CCG-CUGGGag--CGU- -5'
23580 3' -65.7 NC_005261.1 + 101270 0.66 0.46278
Target:  5'- cGaGCucuGCGccGCGCGGCGGgCCUUGCGc -3'
miRNA:   3'- uC-CGu--CGCc-CGCGCCGCUgGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 77084 0.66 0.46278
Target:  5'- gAGGC-GCuGGCGCGGaCGcuGCUCUCGaCGg -3'
miRNA:   3'- -UCCGuCGcCCGCGCC-GC--UGGGAGC-GU- -5'
23580 3' -65.7 NC_005261.1 + 40682 0.66 0.46278
Target:  5'- cGGGCGGaCGGGC-CGGCaccgccggGGCCgccgaUCGCGg -3'
miRNA:   3'- -UCCGUC-GCCCGcGCCG--------CUGGg----AGCGU- -5'
23580 3' -65.7 NC_005261.1 + 106109 0.66 0.46278
Target:  5'- cGGuUGGC-GGCGCGGUGGCuggccgCCUCGCc -3'
miRNA:   3'- uCC-GUCGcCCGCGCCGCUG------GGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 1592 0.66 0.46278
Target:  5'- cGGuUGGC-GGCGCGGUGGCuggccgCCUCGCc -3'
miRNA:   3'- uCC-GUCGcCCGCGCCGCUG------GGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 39447 0.66 0.46278
Target:  5'- aGGGCcccgagccuccGCGcGGCGCGGCGccccaacggGCCCgcCGCGg -3'
miRNA:   3'- -UCCGu----------CGC-CCGCGCCGC---------UGGGa-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 17129 0.66 0.46278
Target:  5'- cGGCGGCGGGUacGcCGGCGGgUCgaCGUAg -3'
miRNA:   3'- uCCGUCGCCCG--C-GCCGCUgGGa-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 29908 0.66 0.46278
Target:  5'- cGGGUcGCGGaGCacGCGGCGGCCgUCu-- -3'
miRNA:   3'- -UCCGuCGCC-CG--CGCCGCUGGgAGcgu -5'
23580 3' -65.7 NC_005261.1 + 31533 0.66 0.46278
Target:  5'- -uGCAGCgcuGGGaCGCGaucggcGCGGCCCUCGg- -3'
miRNA:   3'- ucCGUCG---CCC-GCGC------CGCUGGGAGCgu -5'
23580 3' -65.7 NC_005261.1 + 69531 0.66 0.46278
Target:  5'- uGGC-GCGGGCGCuGGCG-CgCgCGCu -3'
miRNA:   3'- uCCGuCGCCCGCG-CCGCuGgGaGCGu -5'
23580 3' -65.7 NC_005261.1 + 119304 0.66 0.46278
Target:  5'- -aGCGGaGGGCGaGGCcucGCCCUCGCc -3'
miRNA:   3'- ucCGUCgCCCGCgCCGc--UGGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 91239 0.66 0.46278
Target:  5'- cGGCGGCGcGGCGCGcGCuGCCggCGg- -3'
miRNA:   3'- uCCGUCGC-CCGCGC-CGcUGGgaGCgu -5'
23580 3' -65.7 NC_005261.1 + 53223 0.66 0.461899
Target:  5'- cGGUcugGGUGGGaUGCGGCGccagcucGCCCcgCGCGu -3'
miRNA:   3'- uCCG---UCGCCC-GCGCCGC-------UGGGa-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 44151 0.66 0.461899
Target:  5'- cGGCGGCGuucccGGCgGCGGCGGuucugcuCCCggCGCc -3'
miRNA:   3'- uCCGUCGC-----CCG-CGCCGCU-------GGGa-GCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.