miRNA display CGI


Results 21 - 40 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 90200 0.78 0.06536
Target:  5'- aGGGagcGCGGGgGCGGCGgagcGCCCUCGCGc -3'
miRNA:   3'- -UCCgu-CGCCCgCGCCGC----UGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 84125 0.78 0.066878
Target:  5'- gGGGCAGCGGGCGgggucgcUGGCGGgCCUCGg- -3'
miRNA:   3'- -UCCGUCGCCCGC-------GCCGCUgGGAGCgu -5'
23580 3' -65.7 NC_005261.1 + 65521 0.78 0.067049
Target:  5'- gGGGCGGCGGGCGCgacgcuGGCGgACCUggCGCGc -3'
miRNA:   3'- -UCCGUCGCCCGCG------CCGC-UGGGa-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 38399 0.78 0.067049
Target:  5'- uGGGCGGCGGG-GCGGaCGACCCggcggacggCGCGc -3'
miRNA:   3'- -UCCGUCGCCCgCGCC-GCUGGGa--------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 1416 0.78 0.06878
Target:  5'- cGGCGGCGGGgGCGGCG-CCCgccuccaGCAc -3'
miRNA:   3'- uCCGUCGCCCgCGCCGCuGGGag-----CGU- -5'
23580 3' -65.7 NC_005261.1 + 8103 0.78 0.06878
Target:  5'- cGGCGGaCGGcGCGCGGCGGCUCgccaaggCGCAg -3'
miRNA:   3'- uCCGUC-GCC-CGCGCCGCUGGGa------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 99088 0.78 0.06878
Target:  5'- aGGGCGGCGcGGCGCGcaGCGGCUugCUCGCGa -3'
miRNA:   3'- -UCCGUCGC-CCGCGC--CGCUGG--GAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 105933 0.78 0.06878
Target:  5'- cGGCGGCGGGgGCGGCG-CCCgccuccaGCAc -3'
miRNA:   3'- uCCGUCGCCCgCGCCGCuGGGag-----CGU- -5'
23580 3' -65.7 NC_005261.1 + 134764 0.78 0.070555
Target:  5'- uGGCGcgguacucgacGCGcGGCGCGGCGGCCCgCGCGc -3'
miRNA:   3'- uCCGU-----------CGC-CCGCGCCGCUGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 30247 0.78 0.070555
Target:  5'- uGGCGcgguacucgacGCGcGGCGCGGCGGCCCgCGCGc -3'
miRNA:   3'- uCCGU-----------CGC-CCGCGCCGCUGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 88175 0.78 0.072373
Target:  5'- cGGCAGCGGGCuucucgcgGCGGCGcugcACCgUCGCGc -3'
miRNA:   3'- uCCGUCGCCCG--------CGCCGC----UGGgAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 42497 0.78 0.072373
Target:  5'- cGGCGGCGGcgccgcugaGCGCGGCgGGCCCgagCGCGa -3'
miRNA:   3'- uCCGUCGCC---------CGCGCCG-CUGGGa--GCGU- -5'
23580 3' -65.7 NC_005261.1 + 26600 0.78 0.074236
Target:  5'- cGGCGGCGGGCgGCGGCGGCacggCGCc -3'
miRNA:   3'- uCCGUCGCCCG-CGCCGCUGgga-GCGu -5'
23580 3' -65.7 NC_005261.1 + 11708 0.78 0.074236
Target:  5'- aGGcGCGGCGGGCGCgGGCG-CCCagGCAg -3'
miRNA:   3'- -UC-CGUCGCCCGCG-CCGCuGGGagCGU- -5'
23580 3' -65.7 NC_005261.1 + 134229 0.78 0.074236
Target:  5'- cGGCAGCGucGGCGUGGCGcacgcGCCCUgCGCGg -3'
miRNA:   3'- uCCGUCGC--CCGCGCCGC-----UGGGA-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 34776 0.77 0.078101
Target:  5'- uGGCGaCGGGCGCGGCGGCCgacCGCGa -3'
miRNA:   3'- uCCGUcGCCCGCGCCGCUGGga-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 2839 0.77 0.080105
Target:  5'- cGGGCGGCaGGGC-CGGCGGCCCccUCGUc -3'
miRNA:   3'- -UCCGUCG-CCCGcGCCGCUGGG--AGCGu -5'
23580 3' -65.7 NC_005261.1 + 107356 0.77 0.080105
Target:  5'- cGGGCGGCaGGGC-CGGCGGCCCccUCGUc -3'
miRNA:   3'- -UCCGUCG-CCCGcGCCGCUGGG--AGCGu -5'
23580 3' -65.7 NC_005261.1 + 67112 0.77 0.082158
Target:  5'- cGGGCGGCGcgcgcaGUGCGGCGGCCCgacCGCGg -3'
miRNA:   3'- -UCCGUCGCc-----CGCGCCGCUGGGa--GCGU- -5'
23580 3' -65.7 NC_005261.1 + 59731 0.77 0.084261
Target:  5'- cGGCAGCGGcggcGCGCGGCcGCCCUC-CAc -3'
miRNA:   3'- uCCGUCGCC----CGCGCCGcUGGGAGcGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.