miRNA display CGI


Results 21 - 40 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 107889 0.66 0.436743
Target:  5'- aGGGCcGCGaGCGCGGCcGCCagcCGCGc -3'
miRNA:   3'- -UCCGuCGCcCGCGCCGcUGGga-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 134328 0.66 0.419861
Target:  5'- cGGCGgcGCGGGCGCccGCGccGCgCUCGCc -3'
miRNA:   3'- uCCGU--CGCCCGCGc-CGC--UGgGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 4128 0.66 0.411569
Target:  5'- cGGCGGCGaGcGCGCgccGGCGcGCCgagagCUCGCAc -3'
miRNA:   3'- uCCGUCGC-C-CGCG---CCGC-UGG-----GAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 109641 0.66 0.436743
Target:  5'- cGGC-GCGGGCGgccCGcCGGCgCUCGCGc -3'
miRNA:   3'- uCCGuCGCCCGC---GCcGCUGgGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 32022 0.66 0.411569
Target:  5'- cGGCcGCGGGCGCuuuuguuuaaacGGCG-CCacgCGCGc -3'
miRNA:   3'- uCCGuCGCCCGCG------------CCGCuGGga-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 29632 0.66 0.44533
Target:  5'- gAGGCGcuggugcccGUGGGCGaGGCcaacGCCUUCGCGc -3'
miRNA:   3'- -UCCGU---------CGCCCGCgCCGc---UGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 135466 0.66 0.427409
Target:  5'- cGGgGGCGGGCcucgaggcccgccGCGaCGGCCCgccgcggCGCAa -3'
miRNA:   3'- uCCgUCGCCCG-------------CGCcGCUGGGa------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 53329 0.66 0.411569
Target:  5'- cGGaGguGUGGGCG-GGC-ACCUUCGCc -3'
miRNA:   3'- -UC-CguCGCCCGCgCCGcUGGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 64889 0.66 0.43589
Target:  5'- cGGCGcCGGGCGgagacgaCGucGUGACCCUCGUg -3'
miRNA:   3'- uCCGUcGCCCGC-------GC--CGCUGGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 49747 0.66 0.436743
Target:  5'- gAGcGCGGCGcgcuccGGCGCGGCacGGCCCgcccacaCGCu -3'
miRNA:   3'- -UC-CGUCGC------CCGCGCCG--CUGGGa------GCGu -5'
23580 3' -65.7 NC_005261.1 + 51208 0.66 0.411569
Target:  5'- -cGCGGUGGcGCGCGG-GGCCg-CGCAc -3'
miRNA:   3'- ucCGUCGCC-CGCGCCgCUGGgaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 35927 0.66 0.428253
Target:  5'- -cGCcGCGGcGCGCGGCuacGACCCgcggcCGCu -3'
miRNA:   3'- ucCGuCGCC-CGCGCCG---CUGGGa----GCGu -5'
23580 3' -65.7 NC_005261.1 + 45916 0.66 0.44533
Target:  5'- uGGGCcgcGCGGaccGCGCGGCGcucAUCCUgGCc -3'
miRNA:   3'- -UCCGu--CGCC---CGCGCCGC---UGGGAgCGu -5'
23580 3' -65.7 NC_005261.1 + 11102 0.66 0.44533
Target:  5'- gGGGCgGGCGGGCGCGcGC-AUaaaaaUCGCGg -3'
miRNA:   3'- -UCCG-UCGCCCGCGC-CGcUGgg---AGCGU- -5'
23580 3' -65.7 NC_005261.1 + 35338 0.66 0.428253
Target:  5'- cGGGcCAG-GGGCGCGG-GGCUCcCGCc -3'
miRNA:   3'- -UCC-GUCgCCCGCGCCgCUGGGaGCGu -5'
23580 3' -65.7 NC_005261.1 + 31477 0.66 0.419861
Target:  5'- cGGCaagcucguGGCGGGCGCGGaGGCgCCggggcUGCAc -3'
miRNA:   3'- uCCG--------UCGCCCGCGCCgCUG-GGa----GCGU- -5'
23580 3' -65.7 NC_005261.1 + 58361 0.66 0.440166
Target:  5'- uGGGCcgaGGCGGccaagcucaaccccaGCGCGGCGGCUagCGCu -3'
miRNA:   3'- -UCCG---UCGCC---------------CGCGCCGCUGGgaGCGu -5'
23580 3' -65.7 NC_005261.1 + 16818 0.66 0.428253
Target:  5'- -cGUAGCGGcG-GCGGCaGCCgUCGCAc -3'
miRNA:   3'- ucCGUCGCC-CgCGCCGcUGGgAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 38181 0.66 0.436743
Target:  5'- cGGCGGCGGcGCGCucgaGCuGACgCC-CGCGg -3'
miRNA:   3'- uCCGUCGCC-CGCGc---CG-CUG-GGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 80251 0.66 0.419861
Target:  5'- uGGCGGCGcGGcCGCGcGCG-CCUgcgUCGCc -3'
miRNA:   3'- uCCGUCGC-CC-GCGC-CGCuGGG---AGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.