miRNA display CGI


Results 21 - 40 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 29632 0.66 0.44533
Target:  5'- gAGGCGcuggugcccGUGGGCGaGGCcaacGCCUUCGCGc -3'
miRNA:   3'- -UCCGU---------CGCCCGCgCCGc---UGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 32255 0.66 0.416532
Target:  5'- cGGGCGGCgucgacgccgcgcuGGGCGCcgaggccaucgacGGCG-CgCUCGCGg -3'
miRNA:   3'- -UCCGUCG--------------CCCGCG-------------CCGCuGgGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 21514 0.66 0.410746
Target:  5'- aGGGCGGCGacgucGGCcaGCuGGCGGCCgaugagcgaggcgCUCGCGa -3'
miRNA:   3'- -UCCGUCGC-----CCG--CG-CCGCUGG-------------GAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 92021 0.66 0.428253
Target:  5'- cGGCcuucgAGC-GGCGCGGCGACgUgCGCu -3'
miRNA:   3'- uCCG-----UCGcCCGCGCCGCUGgGaGCGu -5'
23580 3' -65.7 NC_005261.1 + 135466 0.66 0.427409
Target:  5'- cGGgGGCGGGCcucgaggcccgccGCGaCGGCCCgccgcggCGCAa -3'
miRNA:   3'- uCCgUCGCCCG-------------CGCcGCUGGGa------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 58361 0.66 0.440166
Target:  5'- uGGGCcgaGGCGGccaagcucaaccccaGCGCGGCGGCUagCGCu -3'
miRNA:   3'- -UCCG---UCGCC---------------CGCGCCGCUGGgaGCGu -5'
23580 3' -65.7 NC_005261.1 + 51208 0.66 0.411569
Target:  5'- -cGCGGUGGcGCGCGG-GGCCg-CGCAc -3'
miRNA:   3'- ucCGUCGCC-CGCGCCgCUGGgaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 11102 0.66 0.44533
Target:  5'- gGGGCgGGCGGGCGCGcGC-AUaaaaaUCGCGg -3'
miRNA:   3'- -UCCG-UCGCCCGCGC-CGcUGgg---AGCGU- -5'
23580 3' -65.7 NC_005261.1 + 31477 0.66 0.419861
Target:  5'- cGGCaagcucguGGCGGGCGCGGaGGCgCCggggcUGCAc -3'
miRNA:   3'- uCCG--------UCGCCCGCGCCgCUG-GGa----GCGU- -5'
23580 3' -65.7 NC_005261.1 + 67010 0.66 0.411569
Target:  5'- aGGGCcGCGuGCGCGcGCGcACCaUCGCGc -3'
miRNA:   3'- -UCCGuCGCcCGCGC-CGC-UGGgAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 35338 0.66 0.428253
Target:  5'- cGGGcCAG-GGGCGCGG-GGCUCcCGCc -3'
miRNA:   3'- -UCC-GUCgCCCGCGCCgCUGGGaGCGu -5'
23580 3' -65.7 NC_005261.1 + 117892 0.66 0.44533
Target:  5'- cGGCAgccGCGGGCgucgcucgugcGCGGCucggGGCCCagUCGCc -3'
miRNA:   3'- uCCGU---CGCCCG-----------CGCCG----CUGGG--AGCGu -5'
23580 3' -65.7 NC_005261.1 + 36342 0.66 0.428253
Target:  5'- gAGG-AGCGcGCGCGGCugggcGCCCUgCGCGc -3'
miRNA:   3'- -UCCgUCGCcCGCGCCGc----UGGGA-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 4128 0.66 0.411569
Target:  5'- cGGCGGCGaGcGCGCgccGGCGcGCCgagagCUCGCAc -3'
miRNA:   3'- uCCGUCGC-C-CGCG---CCGC-UGG-----GAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 49747 0.66 0.436743
Target:  5'- gAGcGCGGCGcgcuccGGCGCGGCacGGCCCgcccacaCGCu -3'
miRNA:   3'- -UC-CGUCGC------CCGCGCCG--CUGGGa------GCGu -5'
23580 3' -65.7 NC_005261.1 + 44313 0.66 0.419027
Target:  5'- cGGCGcaagcccGCGGGCGCcGCG-CCCgcagUCGCu -3'
miRNA:   3'- uCCGU-------CGCCCGCGcCGCuGGG----AGCGu -5'
23580 3' -65.7 NC_005261.1 + 75789 0.66 0.428253
Target:  5'- -cGCuGCugGGGCcCGGCGACCggCUCGCGc -3'
miRNA:   3'- ucCGuCG--CCCGcGCCGCUGG--GAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 75047 0.66 0.436743
Target:  5'- cGGaGGUGGGCGCgGGCGugUCgcggaGCAc -3'
miRNA:   3'- uCCgUCGCCCGCG-CCGCugGGag---CGU- -5'
23580 3' -65.7 NC_005261.1 + 109641 0.66 0.436743
Target:  5'- cGGC-GCGGGCGgccCGcCGGCgCUCGCGc -3'
miRNA:   3'- uCCGuCGCCCGC---GCcGCUGgGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 35927 0.66 0.428253
Target:  5'- -cGCcGCGGcGCGCGGCuacGACCCgcggcCGCu -3'
miRNA:   3'- ucCGuCGCC-CGCGCCG---CUGGGa----GCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.