miRNA display CGI


Results 21 - 40 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 34776 0.77 0.078101
Target:  5'- uGGCGaCGGGCGCGGCGGCCgacCGCGa -3'
miRNA:   3'- uCCGUcGCCCGCGCCGCUGGga-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 26600 0.78 0.074236
Target:  5'- cGGCGGCGGGCgGCGGCGGCacggCGCc -3'
miRNA:   3'- uCCGUCGCCCG-CGCCGCUGgga-GCGu -5'
23580 3' -65.7 NC_005261.1 + 98630 0.79 0.060536
Target:  5'- gGGGCGGCGGGgGCGcGCGGCgCUCGg- -3'
miRNA:   3'- -UCCGUCGCCCgCGC-CGCUGgGAGCgu -5'
23580 3' -65.7 NC_005261.1 + 31976 0.79 0.060536
Target:  5'- cGGCAGCGGcG-GCGGCGGCCCgguagggCGCGg -3'
miRNA:   3'- uCCGUCGCC-CgCGCCGCUGGGa------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 116591 0.79 0.060536
Target:  5'- cGGCAGCGgcguccgcgccGGgGCGGgGACCCUCGCc -3'
miRNA:   3'- uCCGUCGC-----------CCgCGCCgCUGGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 6438 0.8 0.053251
Target:  5'- aGGcGCGGCGGGCGCGGCGucgggGCCCagcggCGCGc -3'
miRNA:   3'- -UC-CGUCGCCCGCGCCGC-----UGGGa----GCGU- -5'
23580 3' -65.7 NC_005261.1 + 125181 0.8 0.045628
Target:  5'- cGGCAG-GGGCGCGcGCGGCCC-CGCGc -3'
miRNA:   3'- uCCGUCgCCCGCGC-CGCUGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 38370 0.81 0.042227
Target:  5'- cGGCGGCGGcGCGCGGCGGCCggUGCc -3'
miRNA:   3'- uCCGUCGCC-CGCGCCGCUGGgaGCGu -5'
23580 3' -65.7 NC_005261.1 + 108965 0.81 0.042227
Target:  5'- -aGCAGCGGGCccuccagcgGCGGCGGCCCgUCGCGc -3'
miRNA:   3'- ucCGUCGCCCG---------CGCCGCUGGG-AGCGU- -5'
23580 3' -65.7 NC_005261.1 + 21587 0.83 0.031752
Target:  5'- cGGCGGCGGGCGC-GCGGgCCUCGCc -3'
miRNA:   3'- uCCGUCGCCCGCGcCGCUgGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 70865 0.78 0.063712
Target:  5'- cGGCGGUGGcGCuGcCGGCGGCCUUCGCGg -3'
miRNA:   3'- uCCGUCGCC-CG-C-GCCGCUGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 104847 0.78 0.063712
Target:  5'- cGGCGGCGGcUGCGGCGGCCCgcagcccggCGCGg -3'
miRNA:   3'- uCCGUCGCCcGCGCCGCUGGGa--------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 11708 0.78 0.074236
Target:  5'- aGGcGCGGCGGGCGCgGGCG-CCCagGCAg -3'
miRNA:   3'- -UC-CGUCGCCCGCG-CCGCuGGGagCGU- -5'
23580 3' -65.7 NC_005261.1 + 42497 0.78 0.072373
Target:  5'- cGGCGGCGGcgccgcugaGCGCGGCgGGCCCgagCGCGa -3'
miRNA:   3'- uCCGUCGCC---------CGCGCCG-CUGGGa--GCGU- -5'
23580 3' -65.7 NC_005261.1 + 88175 0.78 0.072373
Target:  5'- cGGCAGCGGGCuucucgcgGCGGCGcugcACCgUCGCGc -3'
miRNA:   3'- uCCGUCGCCCG--------CGCCGC----UGGgAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 134764 0.78 0.070555
Target:  5'- uGGCGcgguacucgacGCGcGGCGCGGCGGCCCgCGCGc -3'
miRNA:   3'- uCCGU-----------CGC-CCGCGCCGCUGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 8103 0.78 0.06878
Target:  5'- cGGCGGaCGGcGCGCGGCGGCUCgccaaggCGCAg -3'
miRNA:   3'- uCCGUC-GCC-CGCGCCGCUGGGa------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 105933 0.78 0.06878
Target:  5'- cGGCGGCGGGgGCGGCG-CCCgccuccaGCAc -3'
miRNA:   3'- uCCGUCGCCCgCGCCGCuGGGag-----CGU- -5'
23580 3' -65.7 NC_005261.1 + 65521 0.78 0.067049
Target:  5'- gGGGCGGCGGGCGCgacgcuGGCGgACCUggCGCGc -3'
miRNA:   3'- -UCCGUCGCCCGCG------CCGC-UGGGa-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 38399 0.78 0.067049
Target:  5'- uGGGCGGCGGG-GCGGaCGACCCggcggacggCGCGc -3'
miRNA:   3'- -UCCGUCGCCCgCGCC-GCUGGGa--------GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.