miRNA display CGI


Results 41 - 60 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 34425 0.77 0.088623
Target:  5'- uGGCGGCGGGCGCaacGGCGcacaccgaagacGgCCUCGCGg -3'
miRNA:   3'- uCCGUCGCCCGCG---CCGC------------UgGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 46748 0.77 0.088623
Target:  5'- cGGGCGGCGGcCGCGGCGGCgCCgcugggaggCGCGg -3'
miRNA:   3'- -UCCGUCGCCcGCGCCGCUG-GGa--------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 127261 0.76 0.090883
Target:  5'- cGGGC-GCgGGGCgGCGGCGGCCCaCGCGu -3'
miRNA:   3'- -UCCGuCG-CCCG-CGCCGCUGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 135099 0.76 0.090883
Target:  5'- cGGCGGCGGaGCGCgaGGCgGACCC-CGCGu -3'
miRNA:   3'- uCCGUCGCC-CGCG--CCG-CUGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 108068 0.76 0.090883
Target:  5'- cAGcGCGGCGGGCGCGGCG-CCgCUaaggCGCGc -3'
miRNA:   3'- -UC-CGUCGCCCGCGCCGCuGG-GA----GCGU- -5'
23580 3' -65.7 NC_005261.1 + 78860 0.76 0.090883
Target:  5'- uGGC-GCGGGCGCuGGCGggcgacACCCUCGUg -3'
miRNA:   3'- uCCGuCGCCCGCG-CCGC------UGGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 22744 0.76 0.090883
Target:  5'- cGGGC-GCgGGGCgGCGGCGGCCCaCGCGu -3'
miRNA:   3'- -UCCGuCG-CCCG-CGCCGCUGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 3551 0.76 0.090883
Target:  5'- cAGcGCGGCGGGCGCGGCG-CCgCUaaggCGCGc -3'
miRNA:   3'- -UC-CGUCGCCCGCGCCGCuGG-GA----GCGU- -5'
23580 3' -65.7 NC_005261.1 + 69699 0.76 0.090883
Target:  5'- gGGGCGcGCGGGCGcCGGCGGCgCCg-GCAg -3'
miRNA:   3'- -UCCGU-CGCCCGC-GCCGCUG-GGagCGU- -5'
23580 3' -65.7 NC_005261.1 + 35995 0.76 0.093198
Target:  5'- -cGCAGCGGGCGaCGGCGGCCaucgaggccgugCUUGCGu -3'
miRNA:   3'- ucCGUCGCCCGC-GCCGCUGG------------GAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 52986 0.76 0.095569
Target:  5'- cGGCAgGCGGGgGCGGCG-CCCagGCGu -3'
miRNA:   3'- uCCGU-CGCCCgCGCCGCuGGGagCGU- -5'
23580 3' -65.7 NC_005261.1 + 88823 0.76 0.097997
Target:  5'- gGGGCGGCGGcGCGCGcCGGCCCggCGUc -3'
miRNA:   3'- -UCCGUCGCC-CGCGCcGCUGGGa-GCGu -5'
23580 3' -65.7 NC_005261.1 + 20495 0.76 0.097997
Target:  5'- gGGGCGGCGGcGCcaGCGcGCGGCCgCUUGCGg -3'
miRNA:   3'- -UCCGUCGCC-CG--CGC-CGCUGG-GAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 31469 0.76 0.100232
Target:  5'- cGGCGGCcugaguggccgccGGuGCGCGGCgGGCUCUCGCAc -3'
miRNA:   3'- uCCGUCG-------------CC-CGCGCCG-CUGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 135986 0.76 0.100232
Target:  5'- cGGCGGCcugaguggccgccGGuGCGCGGCgGGCUCUCGCAc -3'
miRNA:   3'- uCCGUCG-------------CC-CGCGCCG-CUGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 27536 0.76 0.100483
Target:  5'- cGGCcacGUGGGCGCGGaaGCCCUCGUg -3'
miRNA:   3'- uCCGu--CGCCCGCGCCgcUGGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 11775 0.76 0.103029
Target:  5'- gAGGCgAGCGcgcuGGCGCGGCuGGCCUUUGCGc -3'
miRNA:   3'- -UCCG-UCGC----CCGCGCCG-CUGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 70039 0.76 0.103029
Target:  5'- cGGCGGCGGGgGCgaGGgGGCCCgcggCGCGc -3'
miRNA:   3'- uCCGUCGCCCgCG--CCgCUGGGa---GCGU- -5'
23580 3' -65.7 NC_005261.1 + 6671 0.76 0.103029
Target:  5'- gGGGCAGcCGGGCGaCGGCGACCgccacguucugCUCGa- -3'
miRNA:   3'- -UCCGUC-GCCCGC-GCCGCUGG-----------GAGCgu -5'
23580 3' -65.7 NC_005261.1 + 118922 0.76 0.103029
Target:  5'- cGGCGccGCGGGCGCGGCG-CCg-CGCGg -3'
miRNA:   3'- uCCGU--CGCCCGCGCCGCuGGgaGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.