Results 1 - 20 of 733 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23580 | 3' | -65.7 | NC_005261.1 | + | 138193 | 0.69 | 0.285244 |
Target: 5'- aGGGCgcgGGCGGGCGgggggcagggcggaCGGCGGCUCggccgccgCGCGg -3' miRNA: 3'- -UCCG---UCGCCCGC--------------GCCGCUGGGa-------GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 138132 | 0.72 | 0.180938 |
Target: 5'- cGGGCGGCGGGgcccgGgGGCGcGCCC-CGCAc -3' miRNA: 3'- -UCCGUCGCCCg----CgCCGC-UGGGaGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 138059 | 0.67 | 0.36402 |
Target: 5'- cGGCGGCGgcGGCgGCGGCGGCagcgguccugguCC-CGCGa -3' miRNA: 3'- uCCGUCGC--CCG-CGCCGCUG------------GGaGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 138001 | 0.78 | 0.063712 |
Target: 5'- cGGCGGCGGcUGCGGCGGCCCgcagcccggCGCGg -3' miRNA: 3'- uCCGUCGCCcGCGCCGCUGGGa--------GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 137965 | 0.66 | 0.411569 |
Target: 5'- nGGCGGCGGcUGCGGCGGCggcUGCGg -3' miRNA: 3'- uCCGUCGCCcGCGCCGCUGggaGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 137941 | 0.67 | 0.387314 |
Target: 5'- cGGCGGCGGcUGCGGCGGCggcUGCGg -3' miRNA: 3'- uCCGUCGCCcGCGCCGCUGggaGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 137699 | 0.67 | 0.371676 |
Target: 5'- cGuGCAGCGGGCccCGcGCGACCC-CGgGg -3' miRNA: 3'- uC-CGUCGCCCGc-GC-CGCUGGGaGCgU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 136895 | 0.72 | 0.194307 |
Target: 5'- uGGUgcaGGCGcGGCGCGGCGGcguCCCggagCGCGu -3' miRNA: 3'- uCCG---UCGC-CCGCGCCGCU---GGGa---GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 136571 | 0.69 | 0.286514 |
Target: 5'- aAGGCgcgGGUGGGCG-GGCGcagagacGCCCggCGCAg -3' miRNA: 3'- -UCCG---UCGCCCGCgCCGC-------UGGGa-GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 136376 | 0.67 | 0.379441 |
Target: 5'- cGGCGcgucuuCGGGCcCGGCG-CCUUCGCGc -3' miRNA: 3'- uCCGUc-----GCCCGcGCCGCuGGGAGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 136197 | 0.68 | 0.341712 |
Target: 5'- uGGCcGCGGcGCgGCGGCGGCUgaUCGUg -3' miRNA: 3'- uCCGuCGCC-CG-CGCCGCUGGg-AGCGu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 135986 | 0.76 | 0.100232 |
Target: 5'- cGGCGGCcugaguggccgccGGuGCGCGGCgGGCUCUCGCAc -3' miRNA: 3'- uCCGUCG-------------CC-CGCGCCG-CUGGGAGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 135654 | 0.82 | 0.035227 |
Target: 5'- -uGC-GCGGGCGCgGGCGGCCCUCGCu -3' miRNA: 3'- ucCGuCGCCCGCG-CCGCUGGGAGCGu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 135466 | 0.66 | 0.427409 |
Target: 5'- cGGgGGCGGGCcucgaggcccgccGCGaCGGCCCgccgcggCGCAa -3' miRNA: 3'- uCCgUCGCCCG-------------CGCcGCUGGGa------GCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 135449 | 0.74 | 0.125682 |
Target: 5'- cAGGCGgcGCGGGCGCuGCGGgaCCUCGUAc -3' miRNA: 3'- -UCCGU--CGCCCGCGcCGCUg-GGAGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 135099 | 0.76 | 0.090883 |
Target: 5'- cGGCGGCGGaGCGCgaGGCgGACCC-CGCGu -3' miRNA: 3'- uCCGUCGCC-CGCG--CCG-CUGGGaGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 135035 | 0.66 | 0.409102 |
Target: 5'- cGGCGGCGaGGCcgacgccugcggcgGCaGCGGCCCgcCGCu -3' miRNA: 3'- uCCGUCGC-CCG--------------CGcCGCUGGGa-GCGu -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 134990 | 0.7 | 0.245239 |
Target: 5'- gGGGCcgccggGGCGccccuGGCGCGGCGGgCC-CGCAc -3' miRNA: 3'- -UCCG------UCGC-----CCGCGCCGCUgGGaGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 134839 | 0.66 | 0.454009 |
Target: 5'- cGGCGGaagugccGGCGCGGCuggcGGCCgcgCUCGCGg -3' miRNA: 3'- uCCGUCgc-----CCGCGCCG----CUGG---GAGCGU- -5' |
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23580 | 3' | -65.7 | NC_005261.1 | + | 134764 | 0.78 | 0.070555 |
Target: 5'- uGGCGcgguacucgacGCGcGGCGCGGCGGCCCgCGCGc -3' miRNA: 3'- uCCGU-----------CGC-CCGCGCCGCUGGGaGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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