Results 41 - 60 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 55796 | 0.67 | 0.787246 |
Target: 5'- --cGCGGGGCCGGccGgggGCgCGGACGg- -3' miRNA: 3'- aaaUGCUCCGGCU--Ca--CGgGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 56842 | 0.69 | 0.667332 |
Target: 5'- --gGgGAGGCCGGGaGCCCGG-CGc- -3' miRNA: 3'- aaaUgCUCCGGCUCaCGGGCCuGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 59076 | 0.66 | 0.848634 |
Target: 5'- --cACGGGGCUGcuGGUGCucgCCGGGCu-- -3' miRNA: 3'- aaaUGCUCCGGC--UCACG---GGCCUGuau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 60132 | 0.72 | 0.502745 |
Target: 5'- ---cCGGGGCCGGG-GCCUGGGCcgGc -3' miRNA: 3'- aaauGCUCCGGCUCaCGGGCCUGuaU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 61743 | 0.67 | 0.768263 |
Target: 5'- --cGCGAGcGCCGAGgGCUCGGGg--- -3' miRNA: 3'- aaaUGCUC-CGGCUCaCGGGCCUguau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 63598 | 0.67 | 0.796524 |
Target: 5'- --cGCGGGGCCcuGUGgCCGGAUg-- -3' miRNA: 3'- aaaUGCUCCGGcuCACgGGCCUGuau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 65805 | 0.73 | 0.454555 |
Target: 5'- --cGCG-GGUCgGGGUGCCCGGGCGg- -3' miRNA: 3'- aaaUGCuCCGG-CUCACGGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 70043 | 0.7 | 0.646485 |
Target: 5'- --gGCGGGGgCGAGgggGCCCGcGGCGc- -3' miRNA: 3'- aaaUGCUCCgGCUCa--CGGGC-CUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 71422 | 0.68 | 0.748774 |
Target: 5'- --cGCGGGGCCcg--GCCCGGGCc-- -3' miRNA: 3'- aaaUGCUCCGGcucaCGGGCCUGuau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 72051 | 0.68 | 0.748774 |
Target: 5'- ----gGAGGCgGAcGUGCCUGuGACGUAc -3' miRNA: 3'- aaaugCUCCGgCU-CACGGGC-CUGUAU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 78373 | 0.71 | 0.532706 |
Target: 5'- -cUACGAGGCCGAcGU-CCCGcGCAUGg -3' miRNA: 3'- aaAUGCUCCGGCU-CAcGGGCcUGUAU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 79350 | 0.7 | 0.625591 |
Target: 5'- -cUGCGAGGCCc---GCCCGGACc-- -3' miRNA: 3'- aaAUGCUCCGGcucaCGGGCCUGuau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 79905 | 0.7 | 0.604717 |
Target: 5'- --cGCGAGGC--GGUGCUCGGGCGg- -3' miRNA: 3'- aaaUGCUCCGgcUCACGGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 82490 | 0.65 | 0.861355 |
Target: 5'- ---uCGAGGCCGuccggcagcacGCCCGcGACAUAg -3' miRNA: 3'- aaauGCUCCGGCuca--------CGGGC-CUGUAU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 90398 | 0.66 | 0.856648 |
Target: 5'- --gGCGGGGCUG-GcGCCCGGcGCGg- -3' miRNA: 3'- aaaUGCUCCGGCuCaCGGGCC-UGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 90787 | 0.69 | 0.677716 |
Target: 5'- --aGCG-GGCCGGGcGCCuguCGGACGUGu -3' miRNA: 3'- aaaUGCuCCGGCUCaCGG---GCCUGUAU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 94822 | 0.66 | 0.848634 |
Target: 5'- --gGCgGAGGCCGcccccGGcGCCUGGACGg- -3' miRNA: 3'- aaaUG-CUCCGGC-----UCaCGGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 95097 | 0.69 | 0.688061 |
Target: 5'- --gGCGAGGCCGA-UGCCgaGGGCu-- -3' miRNA: 3'- aaaUGCUCCGGCUcACGGg-CCUGuau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 96115 | 0.7 | 0.615147 |
Target: 5'- --gACGAGGCCGGGcUGCugggCCGGcACAUc -3' miRNA: 3'- aaaUGCUCCGGCUC-ACG----GGCC-UGUAu -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 97258 | 0.76 | 0.319398 |
Target: 5'- --cGCGGGGUCGGGUGgCgGGACGUAc -3' miRNA: 3'- aaaUGCUCCGGCUCACgGgCCUGUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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